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Details for NP_440298.1_2

Name NP_440298.1_2
Length 20
Regular expression [CA]A[CT]C[GA]C[TG][GC]CCA[TC][CG][CA]GGTGGG
Central No

Motif logo

Genes containing this motif

30 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0731 Forward -219 -200 5.11266 0.282
slr1110 Forward -140 -121 5.30933 0.282
sll1664 Forward -349 -330 8.45592 0.225
slr0670 Forward -187 -168 4.62101 0.282
slr1761 Forward -356 -337 5.01433 0.282
sll1285 Forward -49 -30 6.29264 0.282
sll1283 Forward -210 -191 4.42435 0.282
sll1787 Reverse -211 -230 3.44104 0.295
slr1550 Forward -143 -124 9.43923 0.225
slr1811 Forward -327 -308 8.35759 0.225
sll1625 Reverse -371 -390 3.93269 0.295
slr0868 Reverse -285 -304 5.50599 0.282
sll1902 Forward -202 -183 5.11266 0.282
ssr3402 Reverse -152 -171 5.11266 0.282
sll1606 Reverse -262 -281 6.4893 0.282
sll1261 Reverse -264 -283 13.2741 0.139
slr1281 Reverse -131 -150 3.34271 0.295
ssr2799 Reverse -380 -399 3.34271 0.295
slr0150 Forward -244 -225 5.211 0.282
sll0145 Forward -290 -271 11.7008 0.139
slr1926 Forward -235 -216 4.71934 0.282
ssl0769 Reverse -317 -336 12.5858 0.139
ssr0102 Forward -253 -234 5.211 0.282
slr0427 Reverse -362 -381 11.8975 0.139
slr0073 Forward -223 -204 3.04771 0.299
slr0086 Forward -279 -260 8.84924 0.225
sll1499 Forward -49 -30 3.24438 0.295
slr0585 Forward -384 -365 16.7157 0.139
slr5023 Reverse -177 -196 8.45592 0.225
slr5111 Forward -346 -327 3.44104 0.295
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.286  0.714  0.000  0.000  
1.000 0.000 0.000 0.000
0.000 0.571 0.000 0.429
0.000 0.857 0.000 0.143
0.286 0.000 0.714 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.286 0.714
0.000 0.286 0.714 0.000
0.000 0.857 0.000 0.143
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.286 0.000 0.714
0.000 0.714 0.286 0.000
0.286 0.714 0.000 0.000
0.000 0.143 0.714 0.143
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.000 0.143 0.714 0.143
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000