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Details for NP_440295.1_2

Name NP_440295.1_2
Length 20
Regular expression G[CG][ATG][GA]T[GT][GA][TA]T[CTG]T[TC][GAT][CG]C[CA][GA]TT[GC]
Central Yes

Motif logo

Genes containing this motif

44 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1488 Forward -315 -296 5.99764 0.283
slr1417 Reverse -169 -188 6.19431 0.283
sll1035 Reverse -35 -54 6.39097 0.283
slr1106 Forward -200 -181 6.39097 0.283
slr1774 Forward -175 -156 8.45592 0.21
slr1619 Forward -194 -175 4.81767 0.295
sll0641 Forward -270 -251 22.8122 0.0269
sll0635 Forward -284 -265 14.6508 0.207
sll1500 Forward -39 -20 5.89931 0.283
slr1917 Forward -87 -68 7.07928 0.258
sll1792 Reverse -40 -59 9.83255 0.21
sll1747 Reverse -298 -317 9.43923 0.21
sll1734 Forward -28 -9 8.94757 0.21
slr0876 Reverse -249 -268 4.916 0.292
slr0890 Reverse -169 -188 5.01433 0.29
sll1698 Forward -391 -372 5.50599 0.289
slr1742 Reverse -125 -144 8.06259 0.215
slr1744 Reverse -347 -366 5.211 0.289
sll0843 Forward -289 -270 8.75091 0.21
slr1246 Reverse -40 -59 9.83255 0.21
slr1728 Reverse -359 -378 5.211 0.289
sll1987 Forward -144 -125 8.84924 0.21
slr2087 Reverse -60 -79 8.84924 0.21
slr2103 Forward -110 -91 6.4893 0.283
sll0803 Reverse -264 -283 5.11266 0.289
slr1530 Reverse -22 -41 6.29264 0.283
slr1674 Reverse -113 -132 13.3725 0.21
sll0361 Forward -44 -25 10.1275 0.21
slr0420 Forward -155 -136 14.6508 0.207
sll0547 Reverse -141 -160 6.98095 0.258
sll0474 Reverse -363 -382 9.24257 0.21
slr0789 Forward -330 -311 6.09597 0.283
slr0800 Reverse -40 -59 9.83255 0.21
sll0037 Forward -106 -87 8.25926 0.21
sll0033 Forward -379 -360 7.86593 0.218
sll0506 Forward -313 -294 9.24257 0.21
sll0522 Forward -253 -234 8.55425 0.21
slr1457 Forward -104 -85 5.40766 0.289
sll0445 Forward -248 -229 5.70265 0.289
slr1192 Reverse -353 -372 9.3409 0.21
slr7014 Reverse -29 -48 5.99764 0.283
slr7032 Forward -322 -303 11.2092 0.21
6803t12 Forward -247 -228 8.25926 0.21
6803t39 Reverse -143 -162 8.45592 0.21
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 0.800 0.200 0.000
0.400 0.000 0.200 0.400
0.200 0.000 0.800 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.800 0.200
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0.200 0.000 0.000 0.800
0.000 0.000 0.000 1.000
0.000 0.400 0.200 0.400
0.000 0.000 0.000 1.000
0.000 0.200 0.000 0.800
0.200 0.000 0.600 0.200
0.000 0.800 0.200 0.000
0.000 1.000 0.000 0.000
0.200 0.800 0.000 0.000
0.200 0.000 0.800 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.200 0.800 0.000