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Details for NP_440281.1_8

Name NP_440281.1_8
Length 20
Regular expression ACA[GT]CATC[AG]GG[AG][TG][GC]GAT[AC][AC]A
Central No

Motif logo

Genes containing this motif

11 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
ssr1698 Forward -198 -179 13.5691 0.196
ssr2848 Forward -169 -150 10.7175 0.225
sll1927 Reverse -97 -116 18.0924 0.0921
sll1742 Reverse -105 -124 9.83255 0.266
sll1165 Forward -94 -75 11.7008 0.196
slr1243 Reverse -64 -83 11.7008 0.196
sll1160 Reverse -234 -253 14.0608 0.196
sll1608 Reverse -48 -67 12.9791 0.196
slr0903 Reverse -13 -32 18.879 0.0921
ssl7039 Forward -323 -304 11.6025 0.196
slr7041 Reverse -37 -56 11.6025 0.196
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.143 0.143 0.429 0.286
0.143 0.857 0.000 0.000
1.000 0.000 0.000 0.000
0.143 0.143 0.000 0.714
0.000 1.000 0.000 0.000
0.429 0.143 0.429 0.000
0.143 0.000 0.857 0.000
0.143 0.000 0.857 0.000
0.714 0.000 0.286 0.000
0.000 0.000 0.286 0.714
0.000 0.429 0.571 0.000
0.000 0.000 1.000 0.000
0.857 0.000 0.000 0.143
0.000 0.000 0.000 1.000
0.571 0.429 0.000 0.000
0.571 0.286 0.143 0.000
1.000 0.000 0.000 0.000