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Details for NP_440271.1_2

Name NP_440271.1_2
Length 20
Regular expression [GT]T[CT]AA[GA]CAGGG[CT]AA[TC]GG[CT]G[GC]
Central No

Motif logo

Genes containing this motif

126 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1485 Forward -324 -305 -1.08219 0.297
slr1115 Reverse -147 -166 8.84924 0.23
slr1125 Forward -186 -167 30.5804 0.000301
ssr0390 Forward -120 -101 8.35759 0.23
sgl0002 Forward -311 -292 3.04771 0.28
sml0004 Forward -179 -160 3.04771 0.28
sll1325 Forward -250 -231 1.86774 0.284
slr1102 Forward -207 -188 -1.08219 0.297
ssl2009 Reverse -190 -209 6.88262 0.23
slr1779 Reverse -353 -372 2.0644 0.284
sll1669 Forward -106 -87 2.55606 0.28
slr1793 Reverse -86 -105 2.55606 0.28
slr1795 Forward -162 -143 0.0977854 0.292
slr1290 Forward -158 -139 1.47442 0.284
sll1194 Forward -344 -325 5.70265 0.23
sll0943 Forward -284 -265 -1.08219 0.297
slr1079 Reverse -202 -221 5.89931 0.23
sll1509 Forward -238 -219 1.37609 0.284
slr1599 Reverse -128 -147 1.37609 0.284
sll1508 Forward -84 -65 5.80098 0.23
sml0005 Forward -89 -70 0.294447 0.292
slr1847 Reverse -308 -327 2.75272 0.28
slr1914 Forward -21 -2 0.982764 0.284
slr2012 Reverse -354 -373 5.99764 0.23
slr2013 Forward -332 -313 0.0977854 0.292
sll1082 Forward -252 -233 1.96607 0.284
sml0006 Reverse -297 -316 -0.983855 0.297
sll1797 Reverse -150 -169 -0.39387 0.292
ssr2009 Forward -148 -129 2.55606 0.28
slr1546 Reverse -213 -232 2.26107 0.284
slr1228 Forward -399 -380 -1.08219 0.297
slr1443 Forward -225 -206 0.982764 0.284
sll1352 Reverse -342 -361 -0.688862 0.297
slr0879 Forward -313 -294 5.211 0.247
slr0883 Forward -206 -187 1.0811 0.284
sll0863 Forward -37 -18 -0.0988766 0.292
sll0863 Reverse -212 -231 -0.688862 0.297
sll1785 Reverse -102 -121 1.0811 0.284
slr1853 Reverse -195 -214 4.32602 0.28
slr1854 Forward -328 -309 5.01433 0.247
slr1866 Reverse -176 -195 0.196116 0.292
sll1765 Forward -125 -106 1.76941 0.284
ssr3188 Forward -279 -260 7.47261 0.23
sll1624 Reverse -211 -230 2.55606 0.28
sll0839 Reverse -321 -340 -0.39387 0.292
sll1150 Forward -62 -43 0.884433 0.284
slr1253 Reverse -316 -335 5.89931 0.23
slr1253 Reverse -80 -99 0.884433 0.284
slr1258 Forward -299 -280 3.83436 0.28
slr1263 Reverse -6 -25 5.60432 0.23
sll1959 Reverse -146 -165 -0.885524 0.297
slr2059 Forward -284 -265 1.67108 0.284
ssl3692 Forward -246 -227 -0.197208 0.292
slr1724 Forward -238 -219 3.24438 0.28
slr0262 Forward -207 -188 -1.08219 0.297
sll1429 Reverse -267 -286 -0.295539 0.292
ssl2789 Reverse -4 -23 -0.295539 0.292
sll1424 Forward -130 -111 9.14423 0.23
ssr2551 Reverse -22 -41 1.0811 0.284
slr1324 Reverse -185 -204 10.5209 0.223
sll0815 Forward -223 -204 -0.0988766 0.292
sll1387 Reverse -326 -345 1.57275 0.284
slr1279 Forward -287 -268 -0.000545616 0.292
sll1447 Forward -330 -311 -0.688862 0.297
slr1162 Reverse -79 -98 3.24438 0.28
slr1687 Forward -165 -146 -0.295539 0.292
sll0920 Reverse -297 -316 3.24438 0.28
slr0946 Forward -371 -352 8.16093 0.23
slr0947 Reverse -371 -390 11.8975 0.216
slr0953 Reverse -367 -386 -0.983855 0.297
sll1532 Reverse -245 -264 6.19431 0.23
ssl2982 Reverse -1 -20 6.19431 0.23
slr1635 Forward -122 -103 6.19431 0.23
sll1526 Forward -123 -104 -0.787193 0.297
slr1641 Reverse -161 -180 -0.787193 0.297
sll1521 Reverse -191 -210 11.5042 0.216
sll0426 Forward -202 -183 -0.0988766 0.292
sll0273 Forward -73 -54 -1.08219 0.297
slr0401 Reverse -245 -264 3.73603 0.28
slr0401 Forward -176 -157 0.392778 0.292
slr1924 Forward -276 -257 0.884433 0.284
slr0329 Forward -270 -251 -0.590531 0.297
slr0770 Forward -38 -19 3.04771 0.28
slr0771 Forward -342 -323 3.04771 0.28
sll0763 Reverse -125 -144 0.0977854 0.292
slr0001 Reverse -349 -368 7.7676 0.23
sll0191 Reverse -168 -187 2.55606 0.28
sll0408 Reverse -128 -147 -1.08219 0.297
sll0070 Reverse -340 -359 5.99764 0.23
slr0054 Forward -240 -221 3.04771 0.28
slr0055 Reverse -143 -162 5.01433 0.247
sll0060 Forward -330 -311 0.392778 0.292
slr0492 Forward -184 -165 0.392778 0.292
slr0496 Reverse -49 -68 2.65439 0.28
sll0686 Reverse -292 -311 9.0459 0.23
slr0628 Reverse -76 -95 -0.39387 0.292
sll0614 Reverse -43 -62 2.0644 0.284
sll0602 Forward -268 -249 -0.4922 0.294
sll0385 Forward -190 -171 -0.0988766 0.292
ssl0352 Forward -251 -232 0.982764 0.284
slr0204 Forward -319 -300 8.25926 0.23
sll0832 Forward -369 -350 3.24438 0.28
sll0832 Forward -252 -233 -0.197208 0.292
ssr1407 Reverse -58 -77 -0.197208 0.292
slr0833 Reverse -209 -228 3.24438 0.28
slr0833 Reverse -326 -345 -0.197208 0.292
slr0835 Forward -292 -273 2.16274 0.284
sll0480 Reverse -109 -128 1.17943 0.284
slr0509 Forward -74 -55 1.17943 0.284
slr0509 Reverse -291 -310 1.0811 0.284
sll0098 Reverse -231 -250 5.89931 0.23
sll0283 Forward -141 -122 0.294447 0.292
slr0309 Reverse -349 -368 0.294447 0.292
slr0790 Forward -242 -223 -0.590531 0.297
sll0778 Forward -130 -111 -0.4922 0.294
sll0660 Forward -319 -300 6.19431 0.23
sll0658 Reverse -153 -172 16.7157 0.0637
sll0041 Reverse -54 -73 10.3242 0.223
sll0533 Forward -361 -342 -0.197208 0.292
slr0549 Reverse -133 -152 -0.197208 0.292
slr1565 Forward -182 -163 17.3057 0.0637
sll1481 Reverse -275 -294 2.75272 0.28
slr1657 Reverse -151 -170 -0.000545616 0.292
sll0446 Reverse -112 -131 1.37609 0.284
slr0455 Reverse -343 -362 3.93269 0.28
sll0572 Reverse -1 -20 0.982764 0.284
slr0592 Forward -307 -288 0.982764 0.284
sll0565 Reverse -206 -225 0.687771 0.292
slr0603 Reverse -221 -240 5.80098 0.23
slr7032 Forward -155 -136 3.53937 0.28
sll8009 Reverse -196 -215 2.3594 0.284
slr8037 Forward -220 -201 -0.787193 0.297
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.143  0.000  0.500  0.357  
0.000 0.000 0.000 1.000
0.000 0.643 0.143 0.214
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.429 0.000 0.571 0.000
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.071 0.000 0.857 0.071
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.714 0.071 0.214
1.000 0.000 0.000 0.000
0.929 0.000 0.071 0.000
0.000 0.429 0.000 0.571
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.071 0.571 0.071 0.286
0.071 0.071 0.857 0.000
0.071 0.357 0.571 0.000