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Details for NP_440251.1_4

Name NP_440251.1_4
Length 18
Regular expression [TC]TAT[GC][TA][TC]G[CG][TG]T[AT]T[GT][TG]TCC
Central Yes

Motif logo

Genes containing this motif

13 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0981 Forward -100 -83 19.0167 0.0897
ssr1766 Forward -171 -154 19.3117 0.0897
sll1006 Reverse -151 -168 14.1002 0.233
ssr3410 Forward -43 -26 19.9017 0.0897
slr2011 Forward -308 -291 19.9017 0.0897
sll1621 Forward -271 -254 17.8367 0.0992
slr1738 Reverse -40 -57 17.8367 0.0992
slr1529 Reverse -320 -337 14.9851 0.177
sll0191 Forward -138 -121 19.1151 0.0897
sll0063 Forward -183 -166 16.1651 0.137
slr0058 Reverse -361 -378 16.1651 0.137
sll0519 Reverse -253 -270 21.6717 0.0897
slr6043 Reverse -155 -172 15.1818 0.177
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.250  0.000  0.750  
0.000 0.000 0.000 1.000
0.875 0.000 0.000 0.125
0.125 0.000 0.000 0.875
0.000 0.375 0.625 0.000
0.375 0.000 0.000 0.625
0.000 0.250 0.000 0.750
0.000 0.000 1.000 0.000
0.000 0.625 0.375 0.000
0.125 0.125 0.250 0.500
0.000 0.000 0.125 0.875
0.500 0.125 0.000 0.375
0.125 0.000 0.000 0.875
0.000 0.000 0.625 0.375
0.000 0.000 0.375 0.625
0.000 0.125 0.000 0.875
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000