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Details for NP_440233.1_2

Name NP_440233.1_2
Length 20
Regular expression TAT[TG][CA][CG]CTAG[CG]TAAA[GC]AA[GC]A
Central No

Motif logo

Genes containing this motif

20 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1037 Forward -327 -308 3.24438 0.25
slr1619 Forward -91 -72 29.5971 0.000266
sll1920 Reverse -100 -119 -2.0655 0.25
slr2023 Forward -89 -70 -2.0655 0.25
sll1077 Reverse -4 -23 5.70265 0.209
sll1459 Forward -202 -183 -2.95047 0.285
slr1234 Forward -81 -62 3.44104 0.25
sll2013 Forward -173 -154 5.11266 0.25
sll1167 Forward -73 -54 3.6377 0.25
ssr2130 Reverse -93 -112 3.6377 0.25
sll1860 Forward -173 -154 -2.36049 0.25
slr1933 Reverse -252 -271 -2.36049 0.25
slr0337 Reverse -209 -228 2.65439 0.25
sll0170 Forward -334 -315 4.62101 0.25
sll0057 Forward -184 -165 -2.55715 0.25
slr0063 Reverse -34 -53 -2.55715 0.25
sll5036 Reverse -178 -197 7.17762 0.106
slr5038 Forward -363 -344 7.17762 0.106
sll5048 Forward -301 -282 3.34271 0.25
sll7064 Forward -281 -262 4.81767 0.25
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.000  1.000  
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.333 0.667
0.333 0.667 0.000 0.000
0.000 0.667 0.333 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.667 0.333 0.000
0.000 0.000 0.000 1.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.333 0.667 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.333 0.667 0.000
1.000 0.000 0.000 0.000