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Details for NP_440224.1_8

Name NP_440224.1_8
Length 20
Regular expression T[GC]A[TA][TC]T[TG][TC]GG[CA][CA][CG]G[TA][TC]T[CT]TG
Central Yes

Motif logo

Genes containing this motif

5 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1610 Forward -398 -379 24.4839 0.0214
sll1571 Forward -82 -63 23.5989 0.0214
sll0586 Reverse -192 -211 16.3224 0.108
slr0623 Forward -172 -153 16.3224 0.108
6803t05 Reverse -230 -249 18.584 0.0545
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.167  0.833  
0.000 0.333 0.667 0.000
1.000 0.000 0.000 0.000
0.333 0.000 0.000 0.667
0.000 0.333 0.167 0.500
0.000 0.000 0.000 1.000
0.000 0.000 0.333 0.667
0.000 0.333 0.000 0.667
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.333 0.667 0.000 0.000
0.333 0.500 0.000 0.167
0.000 0.500 0.500 0.000
0.000 0.000 1.000 0.000
0.333 0.000 0.167 0.500
0.000 0.333 0.000 0.667
0.000 0.000 0.000 1.000
0.167 0.333 0.167 0.333
0.000 0.000 0.000 1.000
0.000 0.000 0.833 0.167