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Details for NP_440221.1_8

Name NP_440221.1_8
Length 20
Regular expression G[TG][TC][AT]T[AT][TG]CT[GC][GT]G[ACT]C[TA][AT][TG][TA]TT
Central Yes

Motif logo

Genes containing this motif

37 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1681 Reverse -270 -289 13.1758 0.209
sll1670 Reverse -327 -346 20.7473 0.0747
sll1652 Reverse -338 -357 12.4875 0.256
slr1289 Forward -22 -3 12.4875 0.256
slr0983 Forward -220 -201 22.9106 0.0451
sll1941 Forward -263 -244 18.1907 0.0747
slr2042 Reverse -197 -216 18.1907 0.0747
sll1578 Forward -47 -28 12.5858 0.256
sll1924 Forward -397 -378 17.3057 0.0747
slr2015 Reverse -54 -73 17.3057 0.0747
sll1920 Reverse -203 -222 12.3892 0.259
slr1828 Reverse -284 -303 11.7992 0.295
sll1721 Reverse -270 -289 18.6823 0.0747
slr1838 Forward -108 -89 18.6823 0.0747
sll0871 Reverse -313 -332 19.764 0.0747
slr2144 Forward -315 -296 14.7491 0.132
sll0843 Reverse -109 -128 21.1406 0.0747
sll1973 Reverse -305 -324 11.7992 0.295
slr1509 Forward -323 -304 11.6025 0.295
sll1892 Reverse -146 -165 11.6025 0.295
slr1269 Forward -169 -150 23.2056 0.0451
slr1278 Reverse -101 -120 20.354 0.0747
sll1104 Forward -297 -278 13.5691 0.193
slr0395 Forward -50 -31 12.9791 0.222
slr0377 Reverse -226 -245 14.6508 0.132
ssl0601 Reverse -153 -172 11.6025 0.295
sll0396 Forward -127 -108 15.7324 0.0997
sll0474 Reverse -128 -147 11.7992 0.295
sll0778 Forward -38 -19 13.2741 0.206
slr1425 Reverse -128 -147 11.7008 0.295
slr1560 Reverse -10 -29 11.7992 0.295
slr0598 Reverse -62 -81 14.2574 0.15
sll5014 Forward -374 -355 17.404 0.0747
ssl5015 Forward -93 -74 17.404 0.0747
sll8020 Reverse -226 -245 14.1591 0.15
6803t02 Reverse -46 -65 20.7473 0.0747
6803t13 Reverse -256 -275 13.3725 0.205
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.143 0.143 0.286 0.429
0.000 0.286 0.000 0.714
0.429 0.000 0.143 0.429
0.000 0.143 0.000 0.857
0.429 0.000 0.143 0.429
0.143 0.143 0.286 0.429
0.000 1.000 0.000 0.000
0.143 0.143 0.000 0.714
0.143 0.286 0.571 0.000
0.000 0.000 0.571 0.429
0.000 0.000 1.000 0.000
0.429 0.286 0.000 0.286
0.000 1.000 0.000 0.000
0.429 0.000 0.000 0.571
0.571 0.000 0.000 0.429
0.000 0.000 0.286 0.714
0.286 0.000 0.000 0.714
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000