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Details for NP_440213.1_4

Name NP_440213.1_4
Length 20
Regular expression T[CTG]ATGG[CA][AC][AG][CA][TCA][GT][GT][TGA]G[TG][AT][ACT][TA][TG]
Central No

Motif logo

Genes containing this motif

52 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -64 -45 16.1284 0.217
ssl2069 Reverse -297 -316 17.7819 0.217
sll0700 Reverse -275 -294 15.6421 0.217
slr1414 Reverse -56 -75 21.0888 0.113
slr1103 Reverse -164 -183 14.6695 0.282
sll0923 Forward -366 -347 18.7545 0.216
slr1090 Forward -162 -143 15.1558 0.251
sll0651 Reverse -275 -294 15.6421 0.217
slr1601 Forward -213 -194 15.1558 0.251
sll1930 Reverse -275 -294 15.6421 0.217
sll1078 Forward -203 -184 15.2531 0.251
sll1813 Reverse -146 -165 18.56 0.216
slr1549 Forward -254 -235 19.6299 0.216
sll0867 Reverse -269 -288 16.1284 0.217
slr0857 Reverse -275 -294 15.6421 0.217
slr1250 Forward -230 -211 16.5175 0.217
sll1611 Forward -288 -269 15.6421 0.217
slr1716 Reverse -275 -294 15.6421 0.217
sll1984 Reverse -275 -294 15.6421 0.217
slr2102 Forward -31 -12 14.7667 0.272
slr2113 Reverse -275 -294 15.6421 0.217
slr2123 Reverse -103 -122 16.2257 0.217
sll1257 Reverse -275 -294 15.6421 0.217
sll1437 Reverse -275 -294 15.6421 0.217
sll1433 Forward -360 -341 15.3503 0.251
slr0164 Forward -396 -377 14.864 0.262
sll1851 Forward -181 -162 15.6421 0.217
slr1937 Reverse -275 -294 15.6421 0.217
sll0761 Forward -243 -224 15.2531 0.251
sll0317 Forward -218 -199 15.6421 0.217
sll0007 Reverse -361 -380 14.9613 0.258
ssr0349 Forward -343 -324 14.9613 0.258
sll0201 Reverse -275 -294 15.6421 0.217
slr0469 Forward -394 -375 14.864 0.262
sll0487 Reverse -324 -343 18.3655 0.216
slr0106 Reverse -350 -369 17.101 0.217
sll0784 Forward -313 -294 18.0737 0.217
slr0703 Reverse -262 -281 15.6421 0.217
sll0660 Reverse -117 -136 14.9613 0.258
slr0713 Forward -183 -164 14.9613 0.258
slr0765 Forward -168 -149 15.1558 0.251
slr0033 Forward -244 -225 15.7394 0.217
sll0622 Forward -209 -190 17.7819 0.217
ssr0817 Forward -144 -125 15.6421 0.217
slr7012 Forward -211 -192 16.4202 0.217
slr7083 Reverse -324 -343 15.9339 0.217
sll7103 Forward -227 -208 15.6421 0.217
slr7105 Reverse -275 -294 15.6421 0.217
sll8042 Reverse -275 -294 15.6421 0.217
slr8044 Forward -154 -135 15.6421 0.217
slr8046 Reverse -275 -294 15.6421 0.217
slr6043 Forward -209 -190 19.1436 0.216
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.071  0.929  
0.071 0.357 0.214 0.357
0.714 0.143 0.000 0.143
0.000 0.000 0.000 1.000
0.071 0.000 0.786 0.143
0.143 0.000 0.857 0.000
0.286 0.714 0.000 0.000
0.643 0.286 0.071 0.000
0.714 0.000 0.286 0.000
0.214 0.643 0.071 0.071
0.214 0.357 0.000 0.429
0.000 0.143 0.643 0.214
0.071 0.143 0.429 0.357
0.214 0.143 0.286 0.357
0.000 0.000 0.929 0.071
0.000 0.071 0.286 0.643
0.643 0.000 0.071 0.286
0.286 0.286 0.143 0.286
0.214 0.000 0.071 0.714
0.000 0.000 0.357 0.643