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Details for NP_440198.1_2

Name NP_440198.1_2
Length 20
Regular expression GA[GT][CG][AC]A[AGC][AT][GC][CA][CT]C[CGT][AT][GA][GC][GA][GC]GA
Central Yes

Motif logo

Genes containing this motif

40 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1392 Forward -101 -82 16.0753 0.206
slr0743a Forward -150 -131 16.6583 0.206
slr1107 Forward -332 -313 15.9781 0.206
slr0977 Reverse -225 -244 18.5047 0.206
sll0646 Forward -167 -148 13.5487 0.29
sll1945 Reverse -251 -270 16.7555 0.206
slr2034 Forward -388 -369 16.7555 0.206
slr1390 Reverse -179 -198 16.8527 0.206
sll1123 Forward -364 -345 17.6301 0.206
slr1196 Reverse -164 -183 16.8527 0.206
slr1206 Forward -345 -326 18.3104 0.206
sll1743 Forward -296 -277 15.9781 0.206
slr1841 Forward -225 -206 14.4233 0.276
sll1699 Reverse -271 -290 13.6459 0.29
slr1744 Reverse -303 -322 17.4358 0.206
sll1609 Forward -294 -275 19.9624 0.205
slr1719 Reverse -151 -170 15.9781 0.206
sll0254 Forward -132 -113 13.6459 0.29
slr0263 Forward -143 -124 16.464 0.206
slr2089 Forward -324 -305 13.5487 0.29
slr2124 Forward -164 -145 14.6176 0.276
slr0812 Reverse -191 -210 14.0346 0.287
sll1253 Forward -301 -282 14.1317 0.284
sll1870 Reverse -371 -390 13.5487 0.29
slr1478 Reverse -241 -260 14.812 0.276
slr0957 Reverse -133 -152 14.4233 0.276
slr0407 Forward -172 -153 17.3386 0.206
sll0306 Forward -377 -358 15.4922 0.235
slr0321 Reverse -84 -103 15.4922 0.235
sll0162 Reverse -334 -353 17.4358 0.206
sll0005 Forward -316 -297 14.9092 0.276
ssl0788 Forward -131 -112 13.8402 0.29
slr0055 Forward -366 -347 13.6459 0.29
sll0603 Forward -319 -300 16.464 0.206
slr0088 Forward -214 -195 14.6176 0.276
slr0096 Reverse -183 -202 15.0063 0.276
sll7033 Reverse -143 -162 14.4233 0.276
ssl7039 Forward -277 -258 14.2289 0.281
slr7041 Reverse -83 -102 14.2289 0.281
6803t04 Forward -397 -378 22.7805 0.047
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.154  0.846  0.000  
0.923 0.077 0.000 0.000
0.000 0.154 0.615 0.231
0.077 0.615 0.308 0.000
0.615 0.385 0.000 0.000
0.846 0.077 0.077 0.000
0.385 0.231 0.385 0.000
0.769 0.000 0.000 0.231
0.154 0.385 0.462 0.000
0.231 0.615 0.154 0.000
0.000 0.692 0.000 0.308
0.000 0.923 0.077 0.000
0.077 0.462 0.231 0.231
0.615 0.000 0.000 0.385
0.308 0.000 0.692 0.000
0.000 0.385 0.615 0.000
0.308 0.154 0.462 0.077
0.000 0.231 0.769 0.000
0.077 0.000 0.846 0.077
0.923 0.000 0.000 0.077