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Details for NP_440162.1_2

Name NP_440162.1_2
Length 20
Regular expression [CT]GCC[CT][CT][CA][CG][TG]TT[TG][TG][CAG]C[GT]GC[CG]G
Central No

Motif logo

Genes containing this motif

75 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1128 Forward -283 -264 6.88262 0.282
sll0219 Forward -139 -120 10.4225 0.276
sll1030 Forward -330 -311 4.916 0.296
slr0965 Forward -23 -4 6.19431 0.282
sll1018 Reverse -178 -197 9.0459 0.282
sll0654 Forward -40 -21 7.37428 0.282
slr0676 Reverse -287 -306 7.37428 0.282
smr0005 Reverse -238 -257 6.39097 0.282
ssr2699 Reverse -237 -256 5.60432 0.282
ssl2559 Reverse -363 -382 6.09597 0.282
sll1577 Forward -72 -53 6.09597 0.282
slr1145 Reverse -364 -383 8.94757 0.282
ssl2084 Forward -73 -54 16.4207 0.151
sll1818 Reverse -298 -317 9.93088 0.276
sll1805 Reverse -175 -194 8.06259 0.282
sll1717 Reverse -258 -277 5.211 0.282
slr1228 Forward -277 -258 6.29264 0.282
sll1130 Reverse -84 -103 5.30933 0.282
slr1859 Reverse -280 -299 5.70265 0.282
sll1768 Forward -364 -345 8.75091 0.282
slr1881 Forward -113 -94 5.60432 0.282
sll1688 Forward -50 -31 6.39097 0.282
slr1820 Reverse -325 -344 6.39097 0.282
slr1262 Reverse -348 -367 6.88262 0.282
sll1959 Forward -182 -163 9.93088 0.276
slr1991 Forward -109 -90 10.7175 0.276
ssl0453 Forward -29 -10 6.4893 0.282
sll1979 Forward -57 -38 5.89931 0.282
slr2094 Reverse -180 -199 5.89931 0.282
sll1973 Reverse -232 -251 5.89931 0.282
ssl3549 Reverse -293 -312 7.37428 0.282
sll1098 Reverse -260 -279 10.3242 0.276
sll1557 Forward -195 -176 5.11266 0.287
slr0162 Reverse -259 -278 8.16093 0.282
slr1001 Forward -262 -243 5.60432 0.282
ssr0256 Reverse -28 -47 5.60432 0.282
slr0166 Reverse -203 -222 5.60432 0.282
slr1928 Forward -182 -163 9.24257 0.282
sll1861 Reverse -253 -272 5.211 0.282
sll0161 Reverse -203 -222 5.60432 0.282
ssl0296 Reverse -28 -47 5.60432 0.282
sll0157 Forward -176 -157 7.7676 0.282
slr0351 Reverse -339 -358 5.211 0.282
sll0207 Reverse -250 -269 17.699 0.151
slr0233 Forward -251 -232 7.07928 0.282
slr0233 Forward -219 -200 5.40766 0.282
slr0488 Reverse -126 -145 5.80098 0.282
slr0488 Forward -236 -217 5.60432 0.282
sll0689 Reverse -40 -59 5.30933 0.282
sll0681 Reverse -329 -348 8.06259 0.282
slr0645 Forward -274 -255 10.6192 0.276
sll0370 Forward -152 -133 5.01433 0.291
slr0211 Forward -104 -85 8.35759 0.282
slr0900 Forward -325 -306 8.45592 0.282
sll0554 Reverse -335 -354 15.7324 0.151
slr0580 Reverse -325 -344 6.58763 0.282
sll0489 Forward -74 -55 13.8641 0.177
slr0500 Reverse -213 -232 13.8641 0.177
sll0594 Forward -208 -189 6.58763 0.282
ssr1041 Forward -143 -124 16.0274 0.151
slr0788 Forward -272 -253 10.4225 0.276
sll0678 Reverse -227 -246 5.211 0.282
smr0002 Reverse -266 -285 5.211 0.282
slr0765 Reverse -265 -284 14.9458 0.158
sll0033 Forward -344 -325 15.5357 0.151
slr0553 Reverse -344 -363 6.58763 0.282
sll0528 Forward -213 -194 5.80098 0.282
sll1485 Reverse -277 -296 10.6192 0.276
sll1482 Reverse -110 -129 9.0459 0.282
sll1544 Forward -63 -44 5.211 0.282
slr0586 Forward -110 -91 5.30933 0.282
slr5040 Reverse -345 -364 7.17762 0.282
ssl7039 Forward -145 -126 12.1925 0.249
slr7041 Reverse -215 -234 12.1925 0.249
sll7090 Reverse -291 -310 5.80098 0.282
slr7092 Forward -198 -179 5.80098 0.282
ssr6046 Forward -324 -305 9.0459 0.282
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.750  0.000  0.250  
0.000 0.000 0.875 0.125
0.000 1.000 0.000 0.000
0.125 0.875 0.000 0.000
0.000 0.625 0.125 0.250
0.000 0.750 0.000 0.250
0.250 0.625 0.125 0.000
0.000 0.500 0.500 0.000
0.000 0.000 0.375 0.625
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.250 0.750
0.000 0.000 0.375 0.625
0.250 0.500 0.250 0.000
0.125 0.875 0.000 0.000
0.000 0.000 0.500 0.500
0.000 0.000 1.000 0.000
0.000 0.875 0.125 0.000
0.000 0.500 0.500 0.000
0.000 0.000 0.875 0.125