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Details for NP_440120.1_4

Name NP_440120.1_4
Length 15
Regular expression CAG[GT]G[AG][GAC]A[AT]A[TA][GAT][CAG][TG][GCT]
Central Yes

Motif logo

Genes containing this motif

146 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1120 Forward -63 -49 13.4709 0.29
sll1058 Reverse -88 -102 14.7492 0.273
slr0242 Reverse -262 -276 14.2576 0.273
sll0225 Forward -291 -277 15.4376 0.273
slr0250 Reverse -32 -46 14.5526 0.273
sll1326 Reverse -307 -321 13.4709 0.29
slr1415 Forward -292 -278 15.3392 0.273
slr1774 Forward -280 -266 15.5359 0.273
sll1676 Forward -133 -119 14.2576 0.273
sll1671 Reverse -259 -273 14.4542 0.273
slr1790 Forward -83 -69 14.4542 0.273
slr1791 Reverse -279 -293 15.7325 0.273
ssl1792 Forward -235 -221 13.4709 0.29
sll0922 Forward -71 -57 14.3559 0.273
sll0639 Forward -105 -91 14.1593 0.28
slr1595 Forward -397 -383 13.3726 0.29
slr1608 Forward -213 -199 13.5693 0.29
sll1009 Reverse -17 -31 13.7659 0.29
sll1749 Reverse -68 -82 15.7325 0.273
slr1028 Forward -146 -132 14.9459 0.273
slr1378 Forward -380 -366 15.4376 0.273
sll1285 Reverse -223 -237 13.5693 0.29
sll1910 Reverse -382 -396 15.2409 0.273
slr2030 Forward -300 -286 15.2409 0.273
slr1150 Forward -122 -108 17.4042 0.242
ssl3445 Forward -376 -362 14.8476 0.273
slr1205 Forward -190 -176 19.3708 0.0521
slr2073 Forward -319 -305 15.6342 0.273
slr2075 Reverse -131 -145 14.7492 0.273
slr1828 Forward -399 -385 14.8476 0.273
sll1724 Forward -362 -348 13.8643 0.29
sll1717 Forward -264 -250 14.9459 0.273
ssl3177 Forward -378 -364 15.0442 0.273
ssr2049 Forward -350 -336 13.7659 0.29
slr1236 Forward -261 -247 19.5675 0.0521
sll1359 Forward -268 -254 14.0609 0.287
sll1275 Reverse -63 -77 14.0609 0.287
slr1362 Forward -125 -111 14.0609 0.287
sll1274 Forward -110 -96 13.5693 0.29
slr1363 Reverse -11 -25 13.5693 0.29
slr1366 Reverse -117 -131 14.4542 0.273
slr0887 Reverse -120 -134 14.5526 0.273
sll1306 Reverse -153 -167 13.9626 0.29
sll1775 Reverse -286 -300 13.4709 0.29
sll1762 Reverse -293 -307 14.3559 0.273
sll1755 Reverse -218 -232 14.6509 0.273
sll1703 Reverse -192 -206 13.3726 0.29
slr1807 Forward -356 -342 13.3726 0.29
slr1742 Forward -389 -375 18.8791 0.0695
ssr2087 Reverse -307 -321 15.2409 0.273
sll1954 Reverse -101 -115 13.3726 0.29
slr2062 Forward -328 -314 13.3726 0.29
slr1715 Forward -263 -249 13.3726 0.29
sll1609 Forward -238 -224 14.0609 0.287
ssl0452 Reverse -134 -148 15.3392 0.273
ssr3532 Reverse -193 -207 14.1593 0.28
slr2084 Forward -17 -3 15.3392 0.273
sll1426 Forward -65 -51 14.2576 0.273
sll1423 Reverse -378 -392 13.4709 0.29
ssl2781 Reverse -57 -71 13.4709 0.29
slr1506 Forward -57 -43 13.4709 0.29
ssr2554 Forward -337 -323 14.3559 0.273
sll1237 Reverse -328 -342 15.4376 0.273
sll0813 Forward -355 -341 15.4376 0.273
slr0820 Forward -361 -347 15.6342 0.273
sll1878 Reverse -7 -21 14.3559 0.273
slr1977 Forward -139 -125 14.3559 0.273
sll1387 Reverse -19 -33 14.3559 0.273
sll1380 Reverse -350 -364 14.2576 0.273
slr1285 Forward -95 -81 14.3559 0.273
sll1443 Forward -249 -235 14.3559 0.273
slr1161 Reverse -262 -276 14.2576 0.273
slr1173 Forward -353 -339 13.4709 0.29
sll1557 Forward -385 -371 13.6676 0.29
slr0937 Forward -354 -340 13.3726 0.29
slr0952 Forward -175 -161 13.8643 0.29
sll1537 Reverse -3 -17 17.4042 0.242
slr1635 Forward -390 -376 17.0108 0.252
sll1528 Reverse -333 -347 13.4709 0.29
slr1647 Forward -303 -289 13.6676 0.29
slr0447 Forward -242 -228 13.4709 0.29
sll0264 Forward -17 -3 13.5693 0.29
slr0293 Forward -213 -199 15.4376 0.273
slr0395 Forward -387 -373 14.8476 0.273
slr0146 Reverse -170 -184 14.1593 0.28
slr1927 Reverse -72 -86 13.4709 0.29
sll1861 Forward -259 -245 14.6509 0.273
ssl0563 Forward -385 -371 13.9626 0.29
slr0334 Reverse -11 -25 13.4709 0.29
sll0330 Reverse -64 -78 15.2409 0.273
slr0384 Forward -309 -295 14.7492 0.273
slr0351 Forward -345 -331 14.6509 0.273
slr0066 Forward -107 -93 16.8142 0.256
sll0055 Forward -221 -207 15.5359 0.273
slr0480 Forward -358 -344 14.9459 0.273
sll0689 Forward -390 -376 17.1092 0.252
sll0687 Forward -45 -31 15.4376 0.273
sll0373 Reverse -370 -384 13.9626 0.29
sll0188 Reverse -1 -15 13.3726 0.29
slr0191 Forward -196 -182 13.3726 0.29
slr0195 Forward -386 -372 14.2576 0.273
slr0196 Forward -62 -48 13.6676 0.29
slr0909 Forward -294 -280 14.8476 0.273
sll0545 Forward -253 -239 17.6008 0.242
ssr1398 Forward -83 -69 14.9459 0.273
ssr1399 Forward -377 -363 14.9459 0.273
sll0827 Reverse -114 -128 16.9125 0.252
slr0841 Forward -153 -139 16.9125 0.252
slr0088 Reverse -298 -312 13.9626 0.29
slr0093 Forward -276 -262 15.7325 0.273
sll0478 Forward -363 -349 13.3726 0.29
sll0478 Reverse -160 -174 13.3726 0.29
ssr1041 Forward -277 -263 13.3726 0.29
sll0586 Reverse -225 -239 14.5526 0.273
slr0623 Forward -139 -125 14.5526 0.273
slr0109 Reverse -159 -173 13.7659 0.29
slr0300 Forward -291 -277 14.7492 0.273
sll0678 Forward -233 -219 14.6509 0.273
smr0002 Forward -272 -258 14.6509 0.273
sll0667 Forward -256 -242 14.9459 0.273
sll0664 Forward -208 -194 13.4709 0.29
sll0499 Forward -159 -145 13.6676 0.29
slr0544 Reverse -269 -283 13.6676 0.29
sll0493 Forward -348 -334 16.2242 0.273
slr1461 Forward -272 -258 14.3559 0.273
slr1563 Reverse -15 -29 14.4542 0.273
slr1573 Forward -273 -259 15.2409 0.273
slr1585 Forward -364 -350 13.9626 0.29
ssr1256 Reverse -135 -149 15.0442 0.273
sll0722 Reverse -271 -285 15.8309 0.273
ssr2786 Forward -218 -204 15.6342 0.273
sll0436 Reverse -119 -133 13.5693 0.29
slr0454 Forward -29 -15 13.5693 0.29
slr1179 Forward -396 -382 14.2576 0.273
slr1183 Forward -64 -50 16.5192 0.273
sll0577 Reverse -84 -98 13.6676 0.29
slr0588 Forward -112 -98 13.6676 0.29
slr5021 Reverse -292 -306 14.9459 0.273
sll5046 Reverse -276 -290 16.5192 0.273
slr7016 Forward -353 -339 14.2576 0.273
ssl7020 Forward -384 -370 13.5693 0.29
sll7028 Forward -269 -255 13.3726 0.29
slr7083 Reverse -90 -104 14.1593 0.28
slr7102 Forward -211 -197 14.4542 0.273
slr6056 Reverse -91 -105 13.6676 0.29
6803t02 Forward -237 -223 15.3392 0.273
6803t08 Reverse -385 -399 14.9459 0.273
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.842  0.000  0.158  
0.895 0.000 0.105 0.000
0.000 0.000 1.000 0.000
0.105 0.000 0.526 0.368
0.053 0.053 0.737 0.158
0.526 0.105 0.368 0.000
0.316 0.316 0.368 0.000
1.000 0.000 0.000 0.000
0.526 0.000 0.158 0.316
0.895 0.000 0.105 0.000
0.316 0.000 0.000 0.684
0.263 0.000 0.526 0.211
0.211 0.474 0.211 0.105
0.000 0.000 0.316 0.684
0.053 0.211 0.526 0.211