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Details for NP_440119.1_1

Name NP_440119.1_1
Length 17
Regular expression CAAC[TG][CA]C[TA][GC]CACC[CG]TGG
Central Yes

Motif logo

Genes containing this motif

38 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1117 Forward -189 -173 10.0883 0.124
sll0222 Forward -141 -125 2.02515 0.232
slr0254 Reverse -380 -396 2.02515 0.232
sll0221 Reverse -123 -139 9.00665 0.14
sll1677 Forward -384 -368 26.8046 0.00194
sll1198 Reverse -118 -134 2.22182 0.223
slr1078 Reverse -183 -199 1.92682 0.244
sll1749a Reverse -283 -299 2.32015 0.222
slr1851 Forward -311 -295 2.32015 0.222
ssr3451 Forward -119 -103 1.5335 0.297
slr1842 Reverse -333 -349 9.59664 0.139
slr0876 Forward -347 -331 2.8118 0.192
sll1260 Forward -242 -226 21.888 0.00203
slr1336 Reverse -241 -257 21.888 0.00203
ssl2717 Reverse -261 -277 2.91013 0.192
slr0948 Reverse -173 -189 10.4816 0.111
sll0910 Reverse -241 -257 3.00846 0.192
sll0149 Reverse -227 -243 1.63183 0.297
slr1928 Reverse -239 -255 2.41848 0.219
slr1951 Reverse -300 -316 2.02515 0.232
slr0773 Forward -390 -374 22.478 0.00194
sll0755 Forward -239 -223 11.1699 0.0993
sll0753 Reverse -128 -144 2.71347 0.194
sll0410 Forward -390 -374 3.40179 0.179
sll0402 Forward -90 -74 1.5335 0.297
slr0495 Forward -355 -339 10.8749 0.107
slr0638 Forward -163 -147 11.4649 0.0943
sll0384 Reverse -96 -112 1.43517 0.297
slr0195 Reverse -59 -75 2.22182 0.223
slr0913 Forward -183 -167 1.43517 0.297
slr0839 Forward -331 -315 10.3833 0.111
slr0023 Forward -249 -233 1.43517 0.297
sll0038 Reverse -306 -322 10.6783 0.11
slr0926 Forward -233 -217 2.41848 0.219
sll1498 Reverse -251 -267 11.3666 0.0943
ssl5114 Forward -247 -231 2.91013 0.192
ssl7039 Forward -219 -203 9.20332 0.14
slr7041 Reverse -141 -157 9.20332 0.14
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.333 0.667
0.333 0.667 0.000 0.000
0.000 1.000 0.000 0.000
0.333 0.000 0.000 0.667
0.000 0.333 0.667 0.000
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.667 0.333 0.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000