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Details for NP_440116.1_4

Name NP_440116.1_4
Length 20
Regular expression C[TA][GC][GC][AGT][TG][CT][TA]GGG[CG]TT[GT][TG]C[CG]A[CT]
Central No

Motif logo

Genes containing this motif

58 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1119 Reverse -258 -277 8.55425 0.251
sll1052 Reverse -194 -213 8.55425 0.251
ssl2615 Forward -266 -247 6.29264 0.293
sll1656 Reverse -354 -373 15.1424 0.251
sll1193 Reverse -130 -149 6.39097 0.293
sll1186 Reverse -308 -327 6.58763 0.293
slr0688 Reverse -211 -230 12.4875 0.251
sll1002 Reverse -256 -275 10.5209 0.251
sll1945 Forward -105 -86 9.3409 0.251
slr2033 Reverse -131 -150 9.3409 0.251
slr2053 Forward -269 -250 6.68596 0.293
ssr2333 Forward -147 -128 9.63589 0.251
slr1392 Forward -394 -375 9.63589 0.251
sll1584 Reverse -135 -154 10.0292 0.251
sll1120 Forward -63 -44 7.07928 0.273
slr1203 Reverse -54 -73 5.89931 0.296
sll1281 Forward -40 -21 8.35759 0.251
slr1871 Reverse -277 -296 7.07928 0.273
slr1879 Reverse -266 -285 6.4893 0.293
sll2014 Reverse -282 -301 7.17762 0.273
sll2013 Reverse -277 -296 15.1424 0.251
sll1696 Reverse -73 -92 6.78429 0.293
sll1609 Reverse -359 -378 13.2741 0.251
slr1724 Forward -399 -380 6.09597 0.296
slr1731 Reverse -350 -369 8.25926 0.251
sll1430 Reverse -319 -338 9.73422 0.251
ssl2789 Forward -370 -351 11.0125 0.251
slr1518 Forward -152 -133 7.37428 0.273
slr1521 Reverse -70 -89 9.63589 0.251
ssl1520 Reverse -293 -312 5.99764 0.296
sll1900 Forward -144 -125 7.47261 0.273
sll1898 Forward -269 -250 14.4541 0.251
slr1970 Forward -268 -249 11.7008 0.251
sll1867 Forward -249 -230 5.99764 0.296
slr1269 Forward -298 -279 6.19431 0.293
slr0954 Forward -285 -266 11.7992 0.251
slr0162 Forward -241 -222 14.3558 0.251
sll0135 Reverse -143 -162 6.4893 0.293
sll1848 Forward -314 -295 6.19431 0.293
slr1950 Reverse -353 -372 7.47261 0.273
sll0170 Forward -316 -297 5.89931 0.296
slr0186 Reverse -369 -388 15.2408 0.251
slr0069 Forward -246 -227 6.19431 0.293
slr0483 Reverse -70 -89 11.0125 0.251
slr0825 Forward -103 -84 7.96426 0.251
ssr1038 Reverse -304 -323 6.19431 0.293
sll0290 Reverse -16 -35 7.96426 0.251
sll0797 Reverse -152 -171 7.07928 0.273
sll0745 Forward -104 -85 8.16093 0.251
sll0739 Reverse -80 -99 12.4875 0.251
slr1425 Reverse -68 -87 9.24257 0.251
sll1338 Forward -168 -149 7.17762 0.273
slr1463 Reverse -334 -353 8.06259 0.251
slr1588 Reverse -270 -289 11.7008 0.251
sll5048 Forward -43 -24 8.06259 0.251
sll5089 Reverse -147 -166 8.06259 0.251
slr6005 Reverse -174 -193 8.06259 0.251
slr6064 Reverse -174 -193 8.06259 0.251
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.125  0.875  0.000  0.000  
0.375 0.000 0.000 0.625
0.000 0.250 0.750 0.000
0.000 0.250 0.750 0.000
0.375 0.125 0.250 0.250
0.125 0.000 0.375 0.500
0.000 0.750 0.000 0.250
0.250 0.000 0.000 0.750
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.625 0.250 0.125
0.000 0.000 0.000 1.000
0.125 0.000 0.000 0.875
0.000 0.125 0.500 0.375
0.000 0.000 0.250 0.750
0.000 1.000 0.000 0.000
0.000 0.625 0.375 0.000
1.000 0.000 0.000 0.000
0.000 0.500 0.000 0.500