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Details for NP_440114.1_8

Name NP_440114.1_8
Length 20
Regular expression GCC[AG][TA][TC][AC][AG][AG][CG]A[GA][GC][CA][CG]C[CA][AG]AA
Central Yes

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Reverse -58 -77 13.1758 0.287
slr1100 Forward -153 -134 12.4875 0.287
sll1035 Reverse -48 -67 11.6025 0.287
slr1106 Forward -187 -168 11.6025 0.287
ssl1918 Reverse -114 -133 11.1109 0.287
slr1753 Forward -118 -99 11.1109 0.287
sll0877 Forward -278 -259 19.8623 0.106
sll1228 Reverse -239 -258 12.3892 0.287
sll1875 Forward -199 -180 17.404 0.139
sll8009 Forward -183 -164 11.0125 0.287
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.667 0.000 0.333 0.000
0.222 0.000 0.000 0.778
0.000 0.333 0.111 0.556
0.778 0.222 0.000 0.000
0.667 0.000 0.333 0.000
0.556 0.000 0.444 0.000
0.000 0.667 0.333 0.000
1.000 0.000 0.000 0.000
0.333 0.000 0.667 0.000
0.000 0.222 0.778 0.000
0.222 0.778 0.000 0.000
0.111 0.444 0.333 0.111
0.111 0.889 0.000 0.000
0.222 0.778 0.000 0.000
0.556 0.000 0.333 0.111
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000