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Details for NP_440107.1_2

Name NP_440107.1_2
Length 20
Regular expression [AG][CAT][CG]C[CT][AT][GA][CG][CG]A[TA][ACG]GC[CA][AG]G[TG][TC]G
Central No

Motif logo

Genes containing this motif

66 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1125 Forward -333 -314 7.37428 0.299
slr0727 Forward -346 -327 8.16093 0.299
slr0729 Reverse -195 -214 8.35759 0.299
slr0729 Forward -58 -39 7.27595 0.299
slr0237 Reverse -76 -95 8.65258 0.299
slr1417 Reverse -351 -370 8.75091 0.299
slr1096 Reverse -60 -79 12.5858 0.286
sll1192 Reverse -238 -257 7.66927 0.299
ssr2153 Forward -397 -378 7.66927 0.299
slr1303 Forward -245 -226 6.98095 0.299
slr1082 Reverse -348 -367 13.1758 0.286
slr0692 Forward -237 -218 9.63589 0.299
slr1763 Reverse -73 -92 8.45592 0.299
sll1941 Forward -269 -250 9.43923 0.299
slr2042 Reverse -191 -210 9.43923 0.299
sll0993 Forward -374 -355 15.2408 0.286
sll1575 Reverse -166 -185 9.63589 0.299
ssl2084 Forward -62 -43 10.7175 0.299
ssl3432 Forward -254 -235 13.1758 0.286
sll1797 Reverse -148 -167 8.75091 0.299
sll1462 Forward -194 -175 9.93088 0.299
slr1442 Reverse -166 -185 13.7658 0.286
sll1354 Reverse -361 -380 13.1758 0.286
sll1775 Reverse -301 -320 22.2223 0.0849
slr1746 Forward -191 -172 6.88262 0.299
slr0864 Forward -216 -197 6.78429 0.299
sll0838 Reverse -249 -268 6.78429 0.299
slr1724 Forward -235 -216 6.88262 0.299
sll0252 Forward -146 -127 8.84924 0.299
slr0261 Reverse -76 -95 8.84924 0.299
slr2089 Forward -75 -56 7.47261 0.299
sll1994a Forward -397 -378 13.5691 0.286
slr1330 Forward -57 -38 15.6341 0.286
slr1344 Forward -299 -280 7.47261 0.299
slr1347 Reverse -159 -178 6.98095 0.299
sll1894 Forward -226 -207 7.37428 0.299
slr1966 Reverse -7 -26 7.37428 0.299
smr0011 Forward -94 -75 7.37428 0.299
slr1469 Forward -241 -222 7.37428 0.299
sll1558 Forward -204 -185 8.35759 0.299
slr0943 Forward -371 -352 11.4058 0.299
slr0959 Reverse -346 -365 12.8808 0.286
slr1643 Reverse -60 -79 12.7825 0.286
sll0419 Reverse -349 -368 12.9791 0.286
sll0264 Forward -31 -12 7.37428 0.299
slr0346 Reverse -232 -251 7.86593 0.299
sll0006 Reverse -174 -193 8.55425 0.299
sll0210 Reverse -337 -356 11.1109 0.299
slr0224 Reverse -132 -151 8.16093 0.299
sll0402 Reverse -280 -299 7.7676 0.299
slr0440 Reverse -118 -137 7.86593 0.299
sll0462 Forward -35 -16 13.0775 0.286
sll0688 Forward -162 -143 12.3892 0.287
slr0643 Forward -274 -255 8.65258 0.299
sll0891 Forward -183 -164 7.07928 0.299
ssr1407 Reverse -301 -320 11.7008 0.299
sll0078 Forward -356 -337 8.16093 0.299
slr0616 Forward -191 -172 6.98095 0.299
sll0107 Reverse -6 -25 10.4225 0.299
slr0103 Forward -114 -95 10.4225 0.299
sll0044 Forward -333 -314 8.55425 0.299
slr0926 Reverse -117 -136 7.7676 0.299
slr0554 Reverse -104 -123 7.86593 0.299
sll0727 Reverse -265 -284 8.35759 0.299
slr0588 Reverse -259 -278 6.88262 0.299
slr6101 Forward -376 -357 8.94757 0.299
6803t21 Reverse -381 -400 10.2259 0.299
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.778  0.000  0.222  0.000  
0.222 0.444 0.111 0.222
0.000 0.667 0.333 0.000
0.000 1.000 0.000 0.000
0.000 0.556 0.000 0.444
0.444 0.000 0.111 0.444
0.222 0.000 0.778 0.000
0.000 0.778 0.222 0.000
0.000 0.556 0.444 0.000
0.889 0.000 0.111 0.000
0.333 0.111 0.000 0.556
0.333 0.333 0.333 0.000
0.000 0.000 1.000 0.000
0.000 0.889 0.111 0.000
0.444 0.556 0.000 0.000
0.556 0.111 0.333 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.222 0.778
0.000 0.222 0.000 0.778
0.000 0.000 1.000 0.000