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Details for NP_440059.1_3

Name NP_440059.1_3
Length 20
Regular expression CC[CT][TC]T[GA][TAC]T[TC][GA]T[GT]CC[CA][CT]T[GA]CC
Central Yes

Motif logo

Genes containing this motif

66 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0741 Reverse -185 -204 12.4867 0.17
slr0743 Reverse -166 -185 6.88182 0.266
ssl2615 Forward -320 -301 21.9264 0.0578
slr1100 Reverse -312 -331 5.01354 0.299
ssr1604 Reverse -318 -337 6.09517 0.266
sll0930 Forward -178 -159 5.89851 0.269
sll1022 Reverse -358 -377 13.7649 0.17
sll1934 Forward -98 -79 12.1917 0.17
slr2053 Reverse -34 -53 12.1917 0.17
slr1023 Reverse -314 -333 6.78348 0.266
slr2025 Forward -215 -196 5.70185 0.273
sll1818 Forward -305 -286 5.01354 0.299
sll1787 Forward -250 -231 7.86512 0.238
slr1835 Forward -184 -165 7.66846 0.245
ssl3177 Forward -21 -2 13.6666 0.17
slr1229 Forward -250 -231 8.16011 0.226
sll1129 Reverse -330 -349 9.83173 0.17
ssr2061 Forward -75 -56 9.83173 0.17
slr1437 Reverse -190 -209 9.7334 0.17
sll1352 Reverse -304 -323 6.58682 0.266
slr1364 Forward -73 -54 12.7816 0.17
slr1992 Reverse -351 -370 10.7167 0.17
slr1720 Forward -245 -226 6.39016 0.266
sll0248 Forward -224 -205 10.3234 0.17
sll0244 Reverse -185 -204 6.1935 0.266
slr1515 Reverse -291 -310 5.01354 0.299
slr2108 Reverse -195 -214 6.88182 0.266
sll0813 Forward -305 -286 5.11187 0.299
sll0804 Forward -75 -56 13.0766 0.17
sll1876 Forward -298 -279 10.1267 0.17
slr1468 Reverse -48 -67 6.58682 0.266
slr1276 Reverse -315 -334 11.2084 0.17
slr1285 Forward -218 -199 6.09517 0.266
sll1441 Reverse -282 -301 9.7334 0.17
sll1104 Forward -256 -237 6.1935 0.266
sll1102 Forward -392 -373 5.30853 0.299
ssl2148 Reverse -339 -358 5.89851 0.269
sll1557 Reverse -260 -279 9.53674 0.172
sll1522 Forward -389 -370 6.09517 0.266
slr0989 Forward -67 -48 9.93006 0.17
sll0301 Reverse -302 -321 8.35677 0.22
slr0380 Reverse -135 -154 6.98015 0.266
slr0344 Forward -367 -348 11.3067 0.17
slr0018 Forward -44 -25 11.995 0.17
sll0005 Reverse -342 -361 5.2102 0.299
sll0416 Reverse -295 -314 11.405 0.17
slr0493 Reverse -205 -224 5.01354 0.299
sll0887 Forward -383 -364 17.3048 0.144
slr0848 Reverse -287 -306 14.6499 0.17
sll0660 Reverse -291 -310 5.01354 0.299
sll0742 Forward -46 -27 15.9282 0.17
sll0043 Forward -23 -4 5.99684 0.269
sll0900 Reverse -179 -198 11.5033 0.17
ssl1707 Reverse -145 -164 6.1935 0.266
sll0623 Reverse -12 -31 7.4718 0.253
sll1484 Forward -332 -313 5.11187 0.299
sll0722 Reverse -373 -392 5.80018 0.273
ssr2786 Forward -362 -343 12.3883 0.17
sll1110 Reverse -53 -72 6.88182 0.266
slr1188 Forward -250 -231 5.70185 0.273
slr0593 Forward -313 -294 10.0284 0.17
sll5002 Reverse -101 -120 11.11 0.17
sll7064 Reverse -172 -191 6.1935 0.266
slr6029 Forward -153 -134 6.48849 0.266
slr6088 Forward -153 -134 6.48849 0.266
ssl6092 Forward -288 -269 9.24175 0.179
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.000 1.000 0.000 0.000
0.000 0.500 0.182 0.318
0.000 0.455 0.045 0.500
0.000 0.000 0.000 1.000
0.227 0.091 0.682 0.000
0.227 0.227 0.045 0.500
0.000 0.000 0.000 1.000
0.045 0.318 0.136 0.500
0.273 0.000 0.727 0.000
0.000 0.000 0.000 1.000
0.136 0.136 0.455 0.273
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.227 0.409 0.182 0.182
0.000 0.545 0.091 0.364
0.000 0.000 0.000 1.000
0.227 0.000 0.727 0.045
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000