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Details for NP_439984.1_3

Name NP_439984.1_3
Length 15
Regular expression [AT]G[ACT][TA][CT][CT][GT]GG[CA][CG]A[TG]CG
Central Yes

Motif logo

Genes containing this motif

170 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0613 Forward -104 -90 14.0603 0.202
slr1489 Reverse -173 -187 17.1085 0.0975
sll1392 Reverse -311 -325 12.192 0.276
sll1056 Reverse -199 -213 22.32 0.00834
sll0712 Forward -210 -196 19.9601 0.0465
sll0218 Forward -352 -338 16.2235 0.13
slr1416 Reverse -380 -394 14.3553 0.192
sll1030 Forward -73 -59 12.6836 0.263
sll1027 Reverse -19 -33 15.3386 0.158
slr1109 Forward -260 -246 15.3386 0.158
sll1683 Forward -292 -278 13.372 0.223
sll1672 Forward -366 -352 17.3052 0.0967
sll1187 Forward -29 -15 16.1252 0.13
slr0971 Reverse -280 -294 15.7319 0.145
slr0974 Forward -367 -353 14.1586 0.202
slr1077 Forward -228 -214 12.192 0.276
slr1083 Reverse -57 -71 15.8302 0.139
sll1024 Reverse -58 -72 12.0937 0.281
sll0647 Forward -49 -35 12.3887 0.276
slr0692 Reverse -216 -230 20.2551 0.0437
slr1594 Forward -109 -95 18.8785 0.0523
sll1516 Forward -32 -18 13.2736 0.225
slr1596 Reverse -357 -371 13.2736 0.225
ssl2923 Reverse -257 -271 12.0937 0.281
ssl2922 Reverse -29 -43 12.0937 0.281
slr1044 Reverse -195 -209 16.9119 0.102
slr2053 Forward -262 -248 14.8469 0.166
slr1909 Forward -183 -169 15.1419 0.158
sll1830 Forward -228 -214 13.372 0.223
sll0994 Forward -381 -367 17.7968 0.0919
slr1379 Reverse -353 -367 14.0603 0.202
sll1300 Forward -126 -112 13.4703 0.223
slr1385 Reverse -173 -187 14.3553 0.192
ssl2559 Forward -139 -125 13.077 0.239
slr1140 Reverse -114 -128 13.372 0.223
slr1148 Forward -374 -360 13.372 0.223
ssl2084 Forward -385 -371 13.5686 0.223
ssl2084 Reverse -73 -87 12.9786 0.239
sll1817 Forward -142 -128 13.2736 0.225
slr1212 Forward -171 -157 17.4035 0.0932
slr1830 Forward -353 -339 13.4703 0.223
sll1726 Forward -157 -143 15.9285 0.136
sll1726 Forward -313 -299 12.3887 0.276
sll1725 Forward -79 -65 15.2402 0.158
sll1463 Reverse -29 -43 15.5352 0.149
slr1552 Reverse -175 -189 12.192 0.276
slr1752 Reverse -233 -247 13.6669 0.219
ssl1633 Reverse -96 -110 13.8636 0.216
slr0883 Forward -370 -356 17.1085 0.0975
sll0860 Reverse -290 -304 11.9953 0.289
sll1783 Reverse -163 -177 15.2402 0.158
slr1852 Forward -321 -307 15.2402 0.158
slr1874 Reverse -174 -188 12.6836 0.263
sll1764 Forward -260 -246 14.6503 0.177
sll1761 Reverse -263 -277 11.897 0.296
slr1887 Reverse -201 -215 14.5519 0.181
sll2003 Forward -161 -147 18.9768 0.0523
sll2003 Forward -371 -357 16.0269 0.133
slr2143 Reverse -170 -184 18.9768 0.0523
ssl3291 Forward -354 -340 13.8636 0.216
slr1732 Reverse -164 -178 14.0603 0.202
sll1624 Reverse -252 -266 17.5018 0.0919
slr1243 Forward -333 -319 16.6169 0.115
slr1260 Reverse -156 -170 15.0436 0.161
sll1959 Forward -45 -31 13.4703 0.223
slr1994 Reverse -385 -399 16.5185 0.117
slr1724 Reverse -203 -217 16.4202 0.122
slr0264 Reverse -160 -174 12.5853 0.27
ssl0461 Forward -214 -200 15.5352 0.149
sll0248 Forward -144 -130 12.0937 0.281
slr0269 Forward -261 -247 18.4851 0.0684
sll0236 Reverse -373 -387 13.7653 0.219
slr2094 Forward -294 -280 13.7653 0.219
sll1426 Forward -196 -182 15.5352 0.149
slr1512 Forward -282 -268 15.2402 0.158
slr1518 Reverse -194 -208 14.1586 0.202
sll1231 Forward -248 -234 16.1252 0.13
sll0817 Reverse -30 -44 14.0603 0.202
sll0811 Forward -335 -321 19.6651 0.0465
sll0809 Reverse -373 -387 16.1252 0.13
slr0817 Reverse -317 -331 12.3887 0.276
sll1260 Forward -129 -115 14.9452 0.161
slr1336 Reverse -354 -368 14.9452 0.161
slr1343 Reverse -43 -57 19.6651 0.0465
sll1251 Reverse -261 -275 16.3219 0.128
sll1891 Reverse -328 -342 12.2903 0.276
slr1978 Reverse -93 -107 17.5018 0.0919
slr1468 Forward -198 -184 13.8636 0.216
sll1382 Reverse -74 -88 12.9786 0.239
slr1474 Forward -357 -343 12.9786 0.239
sll1380 Forward -144 -130 12.9786 0.239
slr1476 Reverse -65 -79 12.9786 0.239
slr1272 Reverse -90 -104 17.9935 0.0852
sll1103 Forward -49 -35 15.5352 0.149
sll1095 Reverse -242 -256 12.782 0.255
ssl2138 Reverse -362 -376 14.3553 0.192
sll1555 Forward -140 -126 15.0436 0.161
slr0936 Forward -158 -144 17.0102 0.098
slr0958 Forward -87 -73 17.6002 0.0919
slr1646 Forward -355 -341 14.2569 0.2
slr1647 Reverse -265 -279 12.192 0.276
sll0426 Reverse -318 -332 16.6169 0.115
sll0418 Forward -259 -245 12.192 0.276
sll0271 Forward -383 -369 12.782 0.255
slr0286 Reverse -353 -367 14.3553 0.192
slr0147 Forward -181 -167 13.7653 0.219
slr0164 Reverse -268 -282 12.2903 0.276
sll1852 Reverse -378 -392 13.2736 0.225
slr1940 Forward -385 -371 14.0603 0.202
slr0329 Forward -218 -204 14.0603 0.202
slr0171 Forward -77 -63 15.5352 0.149
slr0380 Reverse -172 -186 19.6651 0.0465
slr0381 Reverse -45 -59 16.5185 0.117
slr0346 Reverse -24 -38 12.192 0.276
sll0312 Forward -257 -243 17.4035 0.0932
sll0002 Forward -309 -295 11.897 0.296
slr0213 Reverse -228 -242 11.897 0.296
slr0216 Reverse -366 -380 13.6669 0.219
sll0199 Reverse -292 -306 17.1085 0.0975
slr0226 Forward -134 -120 17.1085 0.0975
slr0233 Reverse -42 -56 12.9786 0.239
sll0416 Reverse -110 -124 17.6985 0.0919
sll0416 Reverse -281 -295 13.2736 0.225
sll0456 Forward -62 -48 16.0269 0.133
sll0687 Reverse -379 -393 12.5853 0.27
sll0608 Reverse -289 -303 12.487 0.272
slr0642 Forward -114 -100 12.487 0.272
slr0417 Reverse -306 -320 15.3386 0.158
ssl0331 Forward -259 -245 17.5018 0.0919
ssr1527 Reverse -204 -218 12.2903 0.276
sgl0001 Forward -348 -334 15.9285 0.136
sll0833 Reverse -351 -365 14.0603 0.202
sll0825 Forward -197 -183 19.0751 0.0523
slr0844 Reverse -267 -281 19.0751 0.0523
slr0076 Reverse -69 -83 15.1419 0.158
slr0503 Reverse -65 -79 14.9452 0.161
ssr0871 Forward -241 -227 12.192 0.276
sll0479 Reverse -143 -157 12.487 0.272
slr0616 Forward -193 -179 20.2551 0.0437
ssr1038 Forward -290 -276 12.2903 0.276
slr0103 Reverse -130 -144 21.4351 0.0186
sll0101 Forward -174 -160 15.8302 0.139
sll0793 Reverse -202 -216 12.487 0.272
slr0798 Forward -360 -346 12.487 0.272
sll0787 Reverse -95 -109 17.0102 0.098
sll0742 Forward -390 -376 14.9452 0.161
sll0738 Reverse -24 -38 18.8785 0.0523
slr0534 Forward -208 -194 14.5519 0.181
sll0508 Reverse -306 -320 13.077 0.239
sll0507 Reverse -187 -201 13.6669 0.219
sll0534 Reverse -283 -297 12.192 0.276
slr1421 Reverse -7 -21 18.3868 0.0685
slr1459 Forward -295 -281 18.4851 0.0684
slr0655 Reverse -22 -36 13.077 0.239
slr0666 Forward -396 -382 15.1419 0.158
sll0449 Reverse -259 -273 17.6002 0.0919
sll0449 Forward -282 -268 13.4703 0.223
sll0572 Forward -326 -312 17.6002 0.0919
slr0604 Forward -332 -318 14.8469 0.166
slr0607 Forward -325 -311 16.2235 0.13
sll5057 Reverse -247 -261 13.6669 0.219
sll5079 Reverse -219 -233 12.9786 0.239
slr7008 Reverse -174 -188 12.782 0.255
sll7034 Forward -78 -64 14.6503 0.177
ssr7035 Reverse -375 -389 14.6503 0.177
slr7081 Reverse -144 -158 13.4703 0.223
slr7081 Forward -167 -153 12.2903 0.276
slr8021 Forward -166 -152 18.8785 0.0523
slr6007 Forward -355 -341 13.4703 0.223
sll6017 Forward -31 -17 15.1419 0.158
slr6066 Forward -355 -341 13.4703 0.223
sll6076 Forward -31 -17 15.1419 0.158
slr6107 Reverse -204 -218 16.7152 0.112
6803t03 Reverse -225 -239 13.372 0.223
6803t10 Forward -37 -23 13.6669 0.219
6803t17 Reverse -180 -194 12.3887 0.276
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.727  0.000  0.000  0.273  
0.091 0.000 0.909 0.000
0.364 0.273 0.091 0.273
0.273 0.000 0.091 0.636
0.000 0.545 0.182 0.273
0.000 0.636 0.091 0.273
0.000 0.000 0.636 0.364
0.000 0.091 0.909 0.000
0.000 0.091 0.909 0.000
0.364 0.636 0.000 0.000
0.000 0.455 0.455 0.091
0.909 0.000 0.091 0.000
0.091 0.000 0.273 0.636
0.000 1.000 0.000 0.000
0.000 0.091 0.909 0.000