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Details for NP_439984.1_2

Name NP_439984.1_2
Length 14
Regular expression GCG[AG]T[CA]GCGGG[CT][TC]G
Central No

Motif logo

Genes containing this motif

33 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0241 Forward -53 -40 11.7207 0.26
slr1097 Forward -105 -92 12.0157 0.252
slr0981 Forward -176 -163 12.704 0.252
ssr1736 Forward -261 -248 15.2606 0.147
slr1761 Reverse -139 -152 12.409 0.252
sll0981 Forward -43 -30 12.0157 0.252
slr1398 Reverse -74 -87 11.4257 0.275
slr1203 Reverse -107 -120 12.0157 0.252
sll1628 Reverse -128 -141 14.9656 0.147
slr1734 Forward -36 -23 14.9656 0.147
slr1724 Reverse -211 -224 14.5723 0.147
slr0261 Reverse -303 -316 14.5723 0.147
slr1343 Reverse -51 -64 12.0157 0.252
ssl3573 Forward -139 -126 12.409 0.252
slr1270 Forward -130 -117 14.6706 0.147
slr1646 Reverse -321 -334 12.409 0.252
slr0280 Forward -117 -104 12.704 0.252
slr0147 Forward -149 -136 11.7207 0.26
sll0006 Reverse -351 -364 15.6539 0.147
sll0597 Reverse -24 -37 11.7207 0.26
sll0794 Reverse -161 -174 11.4257 0.275
slr0926 Reverse -123 -136 12.409 0.252
slr1571 Forward -123 -110 13.3923 0.227
slr0608 Reverse -143 -156 12.3107 0.252
sll5026 Reverse -269 -282 12.704 0.252
slr7059 Reverse -222 -235 12.704 0.252
sll8033 Reverse -328 -341 12.704 0.252
ssl6018 Reverse -360 -373 15.3589 0.147
ssr6020 Forward -63 -50 15.3589 0.147
slr6021 Forward -358 -345 15.3589 0.147
ssl6077 Reverse -360 -373 15.3589 0.147
ssr6079 Forward -63 -50 15.3589 0.147
slr6080 Forward -358 -345 15.3589 0.147
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.167  0.833  0.000  
0.000 1.000 0.000 0.000
0.000 0.000 0.833 0.167
0.500 0.000 0.500 0.000
0.000 0.000 0.000 1.000
0.333 0.667 0.000 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.167 0.000 0.833 0.000
0.000 0.500 0.000 0.500
0.000 0.333 0.000 0.667
0.000 0.000 1.000 0.000