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Details for NP_439967.1_1

Name NP_439967.1_1
Length 19
Regular expression [GT]C[AC]A[TC][AC]G[CGA][CA][CT][CG]A[GT]GGGCA[GA]
Central Yes

Motif logo

Genes containing this motif

53 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1327 Reverse -57 -75 10.6389 0.262
slr1413 Reverse -213 -231 11.2289 0.236
slr1094 Reverse -331 -349 21.7503 0.029
sll1039 Forward -393 -375 11.3272 0.236
slr0966 Reverse -104 -122 14.2771 0.204
sll0634 Forward -348 -330 12.2122 0.236
slr1763 Reverse -188 -206 12.4089 0.236
sll1635 Reverse -171 -189 10.4422 0.262
sll1069 Reverse -72 -90 13.6872 0.214
sll1813 Reverse -256 -274 20.767 0.0393
sll1723 Reverse -67 -85 9.85225 0.299
slr1443 Reverse -113 -131 12.8022 0.225
slr1875 Forward -258 -240 12.1139 0.236
sll2014 Reverse -233 -251 11.4255 0.236
slr1807 Forward -153 -135 13.4905 0.218
sll1626 Reverse -326 -344 16.6371 0.122
slr1251 Forward -383 -365 12.8022 0.225
slr1331 Reverse -260 -278 11.1305 0.239
slr1277 Forward -135 -117 16.3421 0.122
sll1444 Reverse -309 -327 9.85225 0.299
sll1556 Forward -234 -216 10.4422 0.262
slr0280 Reverse -155 -173 9.95058 0.299
slr1945 Reverse -56 -74 10.8356 0.26
slr0379 Forward -373 -355 13.0972 0.225
sll0320 Reverse -293 -311 14.0805 0.207
slr0438 Forward -313 -295 12.5072 0.236
slr0440 Reverse -297 -315 17.1287 0.122
sll0058 Reverse -188 -206 11.2289 0.236
slr0492 Reverse -26 -44 10.4422 0.262
sll0371 Forward -244 -226 11.9172 0.236
slr0896 Forward -305 -287 15.8504 0.126
ssl1533 Forward -376 -358 14.8671 0.174
sll0083 Forward -191 -173 11.4255 0.236
slr0078 Reverse -26 -44 11.4255 0.236
sll0480 Reverse -45 -63 11.2289 0.236
slr0509 Forward -138 -120 11.2289 0.236
slr0522 Reverse -347 -365 11.7205 0.236
slr0616 Reverse -274 -292 10.2456 0.276
slr0114 Forward -316 -298 19.587 0.06
sll0797 Forward -321 -303 16.3421 0.122
sll0775 Forward -352 -334 12.9988 0.225
slr0697 Reverse -202 -220 12.9988 0.225
sll0660 Forward -400 -382 13.7855 0.214
sll0031 Reverse -242 -260 22.3403 0.029
slr0038 Forward -217 -199 22.3403 0.029
sll0622 Reverse -101 -119 15.8504 0.126
sll0450 Reverse -197 -215 10.4422 0.262
slr0449 Forward -230 -212 10.4422 0.262
sll5084 Forward -85 -67 17.6204 0.122
sll7006 Reverse -148 -166 17.0304 0.122
ssl7039 Forward -275 -257 11.7205 0.236
slr7041 Reverse -85 -103 11.7205 0.236
6803t06 Forward -336 -318 11.6222 0.236
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.111  0.000  0.667  0.222  
0.000 1.000 0.000 0.000
0.778 0.222 0.000 0.000
0.889 0.111 0.000 0.000
0.111 0.333 0.111 0.444
0.778 0.222 0.000 0.000
0.000 0.111 0.889 0.000
0.222 0.333 0.333 0.111
0.444 0.556 0.000 0.000
0.000 0.778 0.000 0.222
0.000 0.778 0.222 0.000
0.778 0.111 0.000 0.111
0.000 0.000 0.778 0.222
0.000 0.000 1.000 0.000
0.000 0.111 0.889 0.000
0.111 0.000 0.889 0.000
0.111 0.889 0.000 0.000
0.889 0.000 0.111 0.000
0.333 0.000 0.556 0.111