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Details for NP_439965.1_7

Name NP_439965.1_7
Length 20
Regular expression T[GA]AT[CT][CG][CT][CA]T[TG][TC][CTG]T[CAG]GC[GC]AT[CT]
Central Yes

Motif logo

Genes containing this motif

171 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1311 Reverse -147 -166 12.0717 0.294
sll1057 Forward -328 -309 12.461 0.287
sll1056 Forward -266 -247 10.8063 0.294
sll1049 Forward -234 -215 10.6116 0.294
slr1130 Reverse -295 -314 18.2039 0.11
sll1043 Reverse -261 -280 12.8504 0.287
sll0704 Forward -95 -76 10.0276 0.294
slr0732 Reverse -81 -100 10.0276 0.294
sll0702 Reverse -291 -310 17.7172 0.133
sll0702 Forward -388 -369 14.3104 0.242
slr0733 Reverse -369 -388 14.3104 0.242
slr0739 Reverse -145 -164 18.8853 0.11
sll1326 Forward -121 -102 14.2131 0.242
slr1415 Forward -227 -208 11.7797 0.294
slr1096 Reverse -52 -71 22.0974 0.0554
sll1033 Forward -40 -21 9.93029 0.294
sll1028 Forward -128 -109 13.0451 0.287
slr1791 Forward -319 -300 11.4877 0.294
sll1669 Forward -201 -182 11.4877 0.294
sll1189 Reverse -247 -266 11.4877 0.294
slr1078 Reverse -218 -237 10.9037 0.294
sll1025 Reverse -110 -129 11.1957 0.294
slr0678 Forward -61 -42 12.5584 0.287
sll1512 Forward -208 -189 18.6906 0.11
slr1598 Reverse -47 -66 18.6906 0.11
sll1509 Reverse -235 -254 11.293 0.294
slr1599 Forward -131 -112 11.293 0.294
slr1600 Forward -246 -227 21.5134 0.0554
sll1005 Forward -350 -331 15.2838 0.23
sll1004 Reverse -159 -178 12.7531 0.287
sll1749 Forward -220 -201 13.4344 0.277
sll1749 Forward -148 -129 10.417 0.294
slr2053 Reverse -233 -252 10.3196 0.294
sll1933 Reverse -239 -258 12.2664 0.294
sll1933 Forward -274 -255 10.0276 0.294
sll0985 Reverse -165 -184 11.9744 0.294
slr1037 Forward -265 -246 11.9744 0.294
slr1376 Reverse -185 -204 16.9385 0.177
slr1378 Reverse -133 -152 12.2664 0.294
slr1385 Reverse -38 -57 10.6116 0.294
sll1575 Forward -308 -289 10.8063 0.294
sll1912 Reverse -109 -128 9.93029 0.294
sll1911 Reverse -208 -227 10.417 0.294
sll1081 Reverse -347 -366 11.6824 0.294
sll1070 Forward -310 -291 10.6116 0.294
ssl3451 Forward -149 -130 10.709 0.294
sll1824 Reverse -67 -86 11.7797 0.294
sll1822 Forward -231 -212 16.1598 0.215
slr2071 Forward -284 -265 11.6824 0.294
sll1739 Forward -129 -110 10.417 0.294
sll1732 Forward -235 -216 12.2664 0.294
sll1713 Reverse -144 -163 13.1424 0.287
sll1143 Forward -307 -288 11.7797 0.294
slr1239 Forward -276 -257 12.169 0.294
slr1240 Forward -334 -315 10.0276 0.294
slr0876 Reverse -271 -290 10.9037 0.294
ssl1633 Reverse -90 -109 15.8678 0.215
sll1317 Reverse -343 -362 11.1957 0.294
slr1865 Forward -398 -379 9.93029 0.294
sll1776 Forward -27 -8 10.8063 0.294
slr1874 Reverse -192 -211 15.7705 0.215
slr1740 Reverse -234 -253 11.4877 0.294
sll0857 Forward -308 -289 10.8063 0.294
sll0839 Forward -97 -78 10.6116 0.294
sll1156 Forward -356 -337 9.93029 0.294
sll1147 Forward -100 -81 12.8504 0.287
slr1256 Reverse -58 -77 12.8504 0.287
ssr3402 Reverse -359 -378 10.0276 0.294
sll1606 Forward -230 -211 12.7531 0.287
sll1590 Forward -47 -28 11.4877 0.294
slr1728 Reverse -292 -311 11.4877 0.294
ssr2912 Forward -282 -263 12.5584 0.287
ssr2912 Forward -81 -62 11.9744 0.294
slr0261 Reverse -349 -368 10.5143 0.294
ssl0461 Forward -290 -271 11.4877 0.294
slr0273 Reverse -61 -80 11.0983 0.294
sll0236 Forward -157 -138 12.7531 0.287
sll1988 Reverse -218 -237 11.877 0.294
slr2105 Reverse -345 -364 14.4078 0.242
slr1516 Reverse -344 -363 10.5143 0.294
ssr2554 Reverse -52 -71 10.2223 0.294
slr1518 Reverse -339 -358 10.2223 0.294
slr2112 Forward -314 -295 10.6116 0.294
slr1956 Reverse -236 -255 11.877 0.294
sll1899 Forward -206 -187 10.125 0.294
slr1964 Reverse -253 -272 13.9211 0.242
sll1867 Forward -191 -172 11.9744 0.294
sll1384 Forward -269 -250 10.6116 0.294
sll1377 Reverse -35 -54 11.001 0.294
sll1377 Forward -256 -237 10.8063 0.294
slr1478 Forward -260 -241 14.0184 0.242
slr1478 Forward -134 -115 11.001 0.294
sll1373 Forward -133 -114 9.93029 0.294
slr1273 Forward -81 -62 13.8238 0.242
sll1444 Forward -95 -76 12.7531 0.287
slr1672 Reverse -148 -167 15.7705 0.215
slr1677 Forward -269 -250 14.1158 0.242
sll1562 Reverse -10 -29 13.7264 0.247
sll1553 Reverse -298 -317 13.9211 0.242
sll0912 Reverse -145 -164 15.4785 0.227
slr0949 Forward -141 -122 15.4785 0.227
slr0958 Reverse -30 -49 14.7971 0.242
slr0958 Forward -93 -74 10.125 0.294
slr0960 Forward -209 -190 14.0184 0.242
sll1528 Forward -211 -192 14.0184 0.242
sll0272 Forward -118 -99 10.5143 0.294
slr0147 Forward -163 -144 10.5143 0.294
sll0141 Reverse -282 -301 11.293 0.294
slr0161 Forward -112 -93 11.293 0.294
slr0325 Forward -274 -255 10.0276 0.294
sll0327 Reverse -317 -336 10.6116 0.294
ssl0020 Reverse -206 -225 11.4877 0.294
slr0016 Forward -257 -238 11.4877 0.294
slr0019 Forward -75 -56 9.93029 0.294
sll0005 Forward -381 -362 10.8063 0.294
sll0199 Forward -82 -63 12.461 0.287
slr0226 Reverse -344 -363 12.461 0.287
sll0413 Forward -315 -296 20.54 0.0771
ssl0769 Reverse -370 -389 10.8063 0.294
sll0060 Forward -41 -22 11.9744 0.294
slr0065 Reverse -74 -93 11.7797 0.294
sll0462 Forward -43 -24 15.0891 0.236
sll0686 Reverse -236 -255 11.1957 0.294
slr0637 Reverse -313 -332 15.2838 0.23
sll0385 Reverse -138 -157 10.9037 0.294
sll0552 Reverse -26 -45 11.9744 0.294
sll0549 Reverse -80 -99 14.1158 0.242
slr0569 Forward -216 -197 14.1158 0.242
sll0542 Forward -355 -336 10.0276 0.294
slr0581 Reverse -56 -75 12.8504 0.287
slr0582 Reverse -364 -383 12.8504 0.287
sll0080 Reverse -88 -107 10.2223 0.294
slr0084 Forward -158 -139 10.2223 0.294
slr0498 Forward -229 -210 13.8238 0.242
slr0505 Forward -379 -360 10.2223 0.294
ssr0871 Reverse -316 -335 10.5143 0.294
sll0095 Forward -207 -188 10.3196 0.294
slr0311 Forward -123 -104 10.125 0.294
slr0023 Forward -179 -160 14.9918 0.236
slr0040 Forward -313 -294 12.6557 0.287
sll0518 Forward -219 -200 13.9211 0.242
slr0542 Forward -82 -63 11.001 0.294
sll0529 Reverse -69 -88 12.461 0.287
sll1342 Reverse -115 -134 13.1424 0.287
slr1423 Forward -140 -121 13.1424 0.287
slr1431 Reverse -240 -259 11.585 0.294
slr1459 Forward -313 -294 10.6116 0.294
sll1365 Reverse -212 -231 14.8945 0.239
sll1495 Reverse -272 -291 12.6557 0.287
slr1564 Forward -86 -67 10.417 0.294
ssl2874 Reverse -303 -322 14.6025 0.242
slr0749 Forward -221 -202 16.7439 0.18
sll0726 Forward -147 -128 11.0983 0.294
slr0756 Reverse -195 -214 11.0983 0.294
ssr2781 Reverse -209 -228 9.93029 0.294
slr1184 Forward -322 -303 19.372 0.11
sll0563 Reverse -135 -154 10.9037 0.294
slr0609 Forward -135 -116 17.0359 0.177
sll5002 Forward -333 -314 11.293 0.294
sll5033 Forward -205 -186 12.3637 0.294
sll5061 Forward -107 -88 11.0983 0.294
sll5080 Reverse -370 -389 13.8238 0.242
sll5089 Reverse -283 -302 14.9918 0.236
ssr7018 Forward -389 -370 10.0276 0.294
ssr7018 Forward -316 -297 10.0276 0.294
ssr7018 Forward -244 -225 10.0276 0.294
ssr7018 Forward -172 -153 10.0276 0.294
ssr7018 Forward -100 -81 10.0276 0.294
ssr7018 Forward -31 -12 10.0276 0.294
ssl7019 Reverse -329 -348 10.0276 0.294
ssl7019 Reverse -255 -274 10.0276 0.294
ssl7019 Reverse -177 -196 10.0276 0.294
ssl7019 Reverse -103 -122 10.0276 0.294
ssl7019 Reverse -29 -48 10.0276 0.294
ssl7020 Reverse -330 -349 10.0276 0.294
ssl7020 Reverse -256 -275 10.0276 0.294
ssl7020 Reverse -183 -202 10.0276 0.294
ssl7020 Reverse -113 -132 10.0276 0.294
ssl7020 Reverse -40 -59 10.0276 0.294
ssl7021 Reverse -92 -111 10.0276 0.294
ssl7021 Reverse -24 -43 10.0276 0.294
slr7023 Forward -395 -376 10.0276 0.294
slr7058 Reverse -170 -189 10.5143 0.294
slr7080 Reverse -369 -388 16.6465 0.18
sll7089 Reverse -330 -349 12.9477 0.287
slr7100 Forward -157 -138 15.7705 0.215
slr6005 Reverse -310 -329 18.2039 0.11
slr6009 Reverse -105 -124 10.8063 0.294
slr6064 Reverse -310 -329 18.2039 0.11
slr6068 Reverse -105 -124 10.8063 0.294
slr6096 Forward -179 -160 10.2223 0.294
6803t42 Reverse -44 -63 12.6557 0.287
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.000  1.000  
0.267 0.133 0.533 0.067
0.733 0.133 0.067 0.067
0.000 0.067 0.000 0.933
0.133 0.667 0.000 0.200
0.067 0.667 0.267 0.000
0.000 0.800 0.000 0.200
0.267 0.600 0.000 0.133
0.133 0.067 0.133 0.667
0.000 0.000 0.200 0.800
0.067 0.200 0.067 0.667
0.067 0.400 0.200 0.333
0.067 0.067 0.000 0.867
0.267 0.400 0.200 0.133
0.000 0.000 0.933 0.067
0.000 0.867 0.133 0.000
0.067 0.400 0.533 0.000
0.933 0.000 0.067 0.000
0.000 0.000 0.000 1.000
0.000 0.533 0.133 0.333