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Details for NP_439962.1_6

Name NP_439962.1_6
Length 19
Regular expression GA[TC][TC]G[GC][AG]G[GC]TGC[CTG]G[GAC][TAG]G[GC][AC]
Central Yes

Motif logo

Genes containing this motif

86 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1049 Forward -335 -317 7.78729 0.275
sll0716 Reverse -295 -313 15.5554 0.169
slr0722 Reverse -149 -167 10.2456 0.216
slr0739 Forward -325 -307 8.7706 0.239
sll1032 Reverse -322 -340 6.90232 0.288
sll1662 Forward -393 -375 12.3105 0.204
slr1298 Forward -218 -200 11.0322 0.206
sll1186 Reverse -306 -324 13.4905 0.194
slr0966 Forward -385 -367 9.26226 0.23
sll0654 Reverse -49 -67 9.55725 0.23
slr0676 Forward -278 -260 9.55725 0.23
slr0680 Reverse -345 -363 9.65558 0.23
sll0649 Forward -282 -264 9.55725 0.23
slr1591 Reverse -376 -394 11.8189 0.204
slr1609 Forward -269 -251 12.9005 0.202
sll1831 Forward -282 -264 10.1472 0.217
slr1019 Forward -169 -151 8.96727 0.23
sll0986 Forward -268 -250 11.1305 0.205
sll0981 Reverse -226 -244 15.5554 0.169
sll1286 Forward -400 -382 16.8337 0.169
sll1285 Reverse -194 -212 8.96727 0.23
slr1138 Forward -72 -54 12.2122 0.204
sll1814 Forward -141 -123 7.88563 0.275
slr1901 Forward -126 -108 11.2289 0.204
slr1205 Forward -151 -133 6.90232 0.288
sll1745 Reverse -66 -84 12.0155 0.204
ssl2250 Reverse -297 -315 8.67227 0.239
slr1448 Forward -331 -313 12.9005 0.202
sll0863 Reverse -250 -268 7.4923 0.282
slr1876 Forward -141 -123 28.1418 0.000749
slr1878 Forward -212 -194 10.7372 0.214
slr1717 Reverse -329 -347 7.19731 0.288
slr1724 Reverse -126 -144 11.6222 0.204
sll0254 Forward -317 -299 6.90232 0.288
slr2105 Forward -317 -299 8.96727 0.23
sll1232 Forward -283 -265 10.5406 0.216
sll1232 Forward -243 -225 8.96727 0.23
sll1386 Forward -333 -315 7.98396 0.275
slr1276 Forward -196 -178 6.90232 0.288
sll1096 Forward -335 -317 7.68896 0.275
sll1091 Reverse -86 -104 15.2604 0.169
slr1167 Forward -296 -278 15.2604 0.169
sll0269 Reverse -363 -381 6.90232 0.288
sll0360 Forward -21 -3 6.90232 0.288
sll1854 Forward -21 -3 7.29564 0.287
sll1849 Reverse -250 -268 7.78729 0.275
slr1939 Reverse -373 -391 11.3272 0.204
sll0171 Forward -229 -211 9.0656 0.23
sll0158 Forward -274 -256 12.5072 0.204
sll0329 Forward -184 -166 7.78729 0.275
sll0328 Forward -342 -324 14.3755 0.194
ssl1417 Forward -259 -241 7.29564 0.287
slr0436 Forward -321 -303 8.67227 0.239
slr0438 Reverse -375 -393 10.3439 0.216
sll0067 Forward -140 -122 10.4422 0.216
slr0063 Reverse -367 -385 13.3922 0.194
slr0468 Forward -109 -91 7.19731 0.288
slr0489 Forward -328 -310 11.6222 0.204
sll0455 Forward -147 -129 10.2456 0.216
sll0683 Forward -263 -245 12.1139 0.204
sll0614 Forward -202 -184 11.4255 0.204
sll0394 Reverse -289 -307 7.4923 0.282
slr0416 Forward -148 -130 11.3272 0.204
sll0188 Reverse -18 -36 13.7855 0.194
slr0191 Forward -179 -161 13.7855 0.194
sll0552 Forward -130 -112 15.6538 0.169
sll0834 Reverse -363 -381 10.8356 0.213
slr0509 Forward -276 -258 10.6389 0.216
slr0625 Forward -238 -220 8.47561 0.248
sll0103 Forward -396 -378 7.09898 0.288
slr0535 Reverse -201 -219 8.96727 0.23
slr0536 Forward -74 -56 9.45892 0.23
slr0925 Reverse -292 -310 6.80398 0.292
slr0926 Forward -128 -110 11.9172 0.204
sll0520 Forward -328 -310 17.8171 0.169
slr1425 Reverse -312 -330 8.96727 0.23
slr0656 Reverse -94 -112 11.5239 0.204
slr1560 Forward -191 -173 13.6872 0.194
slr0593 Reverse -336 -354 11.9172 0.204
slr0602 Reverse -360 -378 13.2938 0.194
sll7050 Reverse -295 -313 14.9655 0.169
slr7052 Forward -56 -38 14.9655 0.169
sll7085 Forward -88 -70 8.27895 0.258
slr7101 Reverse -160 -178 7.29564 0.287
6803t01 Forward -167 -149 9.36059 0.23
6803t05 Reverse -168 -186 7.68896 0.275
6803t10 Forward -349 -331 9.85225 0.23
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.125  0.000  0.875  0.000  
1.000 0.000 0.000 0.000
0.000 0.250 0.000 0.750
0.000 0.250 0.000 0.750
0.000 0.125 0.875 0.000
0.000 0.250 0.750 0.000
0.500 0.125 0.250 0.125
0.125 0.000 0.875 0.000
0.000 0.375 0.625 0.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.875 0.125 0.000
0.000 0.375 0.250 0.375
0.125 0.000 0.875 0.000
0.250 0.250 0.500 0.000
0.250 0.000 0.250 0.500
0.000 0.000 1.000 0.000
0.000 0.250 0.750 0.000
0.500 0.500 0.000 0.000