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Details for NP_439948.1_2

Name NP_439948.1_2
Length 19
Regular expression [AC]A[AT][TC][AT]A[GA][GA][AT][ATG][AG]A[AG]A[AG][CT]T[GA]A
Central No

Motif logo

Genes containing this motif

89 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1203 Reverse -233 -251 15.5672 0.259
sll1401 Reverse -321 -339 13.6573 0.259
slr1113 Forward -106 -88 14.4213 0.259
sll0711 Forward -295 -277 15.0897 0.259
sll0700 Forward -70 -52 13.5618 0.259
sll1029 Reverse -260 -278 15.7582 0.259
sll1670 Reverse -101 -119 14.8987 0.259
sll1660 Reverse -80 -98 13.5618 0.259
sll1653 Forward -35 -17 15.5672 0.259
slr1306 Reverse -36 -54 14.5168 0.259
sll0651 Forward -70 -52 13.5618 0.259
slr0692 Reverse -170 -188 14.2303 0.259
ssl2922 Forward -368 -350 14.5168 0.259
ssl2920 Forward -346 -328 13.7528 0.259
slr1763 Reverse -3 -21 14.2303 0.259
sll1752 Forward -108 -90 14.0393 0.259
ssr3122 Reverse -162 -180 14.0393 0.259
sll1930 Forward -70 -52 13.5618 0.259
slr1920 Reverse -110 -128 14.3258 0.259
sll1294 Reverse -54 -72 15.0897 0.259
sll1294 Reverse -91 -109 13.3709 0.27
slr1397 Reverse -206 -224 13.5618 0.259
ssr3410 Forward -263 -245 13.4663 0.268
sll1738 Reverse -348 -366 14.7077 0.259
slr0888 Forward -202 -184 18.05 0.259
slr1409 Reverse -14 -32 15.0897 0.259
slr1861 Reverse -314 -332 13.7528 0.259
sll1774 Reverse -38 -56 14.0393 0.259
slr1869 Forward -142 -124 14.0393 0.259
slr1735 Reverse -5 -23 14.8032 0.259
slr0857 Forward -70 -52 13.5618 0.259
sll1161 Forward -164 -146 14.4213 0.259
sll1160 Reverse -16 -34 13.0844 0.283
slr1716 Forward -70 -52 13.5618 0.259
slr2084 Forward -61 -43 13.1799 0.283
sll1984 Forward -70 -52 13.5618 0.259
slr2113 Forward -70 -52 13.5618 0.259
sll1257 Forward -70 -52 13.5618 0.259
slr1340 Forward -213 -195 14.9942 0.259
ssr3341 Reverse -378 -396 13.0844 0.283
slr1472 Forward -28 -10 15.8536 0.259
sll1378 Forward -53 -35 14.6123 0.259
sll1441 Reverse -125 -143 15.2807 0.259
sll1437 Forward -70 -52 13.5618 0.259
slr1678 Forward -58 -40 17.095 0.259
slr1636 Forward -378 -360 13.0844 0.283
slr1648 Reverse -355 -373 13.6573 0.259
slr0400 Reverse -97 -115 16.3311 0.259
slr1937 Forward -70 -52 13.5618 0.259
slr0352 Reverse -157 -175 13.0844 0.283
sll0201 Forward -70 -52 13.5618 0.259
sll0689 Forward -164 -146 13.2754 0.275
sll0615 Forward -148 -130 13.6573 0.259
slr0646 Reverse -227 -245 15.1852 0.259
sll0601 Forward -222 -204 17.3815 0.259
slr0649 Reverse -163 -181 17.3815 0.259
sll0398 Reverse -357 -375 13.7528 0.259
sll0378 Reverse -77 -95 16.0446 0.259
slr0194 Forward -255 -237 21.2012 0.125
ssr0332 Forward -20 -2 15.4717 0.259
slr0211 Forward -304 -286 15.4717 0.259
sll0479 Reverse -347 -365 15.5672 0.259
slr0616 Reverse -317 -335 13.3709 0.27
slr0617 Forward -270 -252 13.3709 0.27
slr0116 Reverse -47 -65 14.7077 0.259
slr0699 Reverse -94 -112 13.2754 0.275
smr0002 Forward -70 -52 13.5618 0.259
slr0704 Forward -231 -213 13.5618 0.259
sll0661 Reverse -15 -33 15.2807 0.259
sll1491 Forward -381 -363 15.9491 0.259
slr1567 Reverse -145 -163 15.9491 0.259
ssr1256 Forward -280 -262 15.4717 0.259
slr0755 Reverse -65 -83 20.3418 0.138
slr0755 Reverse -58 -76 15.9491 0.259
slr0757 Reverse -42 -60 14.1348 0.259
sll1543 Reverse -349 -367 14.9942 0.259
slr1667 Forward -92 -74 14.9942 0.259
sll0451 Forward -43 -25 16.1401 0.259
sll0447 Forward -23 -5 17.7635 0.259
ssr0817 Reverse -349 -367 13.5618 0.259
sll5004 Reverse -354 -372 14.8987 0.259
slr5005 Forward -348 -330 14.8987 0.259
ssr5121 Reverse -18 -36 13.7528 0.259
slr7012 Reverse -17 -35 13.7528 0.259
slr7059 Reverse -60 -78 15.9491 0.259
slr7099 Forward -23 -5 15.6627 0.259
slr7105 Forward -70 -52 13.5618 0.259
sll8042 Forward -70 -52 13.5618 0.259
slr8044 Reverse -359 -377 13.5618 0.259
slr8046 Forward -70 -52 13.5618 0.259
slr6105 Reverse -216 -234 15.3762 0.259
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.600  0.300  0.100  0.000  
1.000 0.000 0.000 0.000
0.600 0.100 0.100 0.200
0.000 0.200 0.000 0.800
0.500 0.000 0.000 0.500
1.000 0.000 0.000 0.000
0.300 0.100 0.600 0.000
0.400 0.100 0.500 0.000
0.700 0.100 0.000 0.200
0.500 0.000 0.200 0.300
0.500 0.000 0.400 0.100
0.900 0.000 0.000 0.100
0.700 0.000 0.200 0.100
0.900 0.000 0.100 0.000
0.600 0.100 0.300 0.000
0.100 0.700 0.000 0.200
0.100 0.100 0.000 0.800
0.200 0.000 0.700 0.100
0.900 0.100 0.000 0.000