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Details for NP_439923.1_5

Name NP_439923.1_5
Length 20
Regular expression [TC][GAT]GG[GA][CT]T[GA][GA]T[CT]GT[GCT]GC[CTG]ATT
Central Yes

Motif logo

Genes containing this motif

23 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0612 Forward -186 -167 9.0459 0.173
sll1405 Forward -123 -104 25.8605 0.00772
sll0702 Reverse -276 -295 8.75091 0.173
slr1306 Forward -283 -264 10.4225 0.161
slr0981 Reverse -303 -322 10.3242 0.161
sll1024 Forward -178 -159 14.2574 0.0934
slr0670 Reverse -19 -38 11.7008 0.141
slr1224 Forward -378 -359 7.57094 0.249
sll1129 Reverse -144 -163 13.6675 0.0934
ssr2061 Forward -261 -242 13.6675 0.0934
sll1151 Reverse -10 -29 18.584 0.0292
ssr2087 Forward -157 -138 18.584 0.0292
slr1723 Reverse -369 -388 8.65258 0.173
slr1724 Reverse -153 -172 9.24257 0.173
sll1994a Forward -100 -81 15.8307 0.0775
sll0816 Reverse -347 -366 8.84924 0.173
slr1166 Reverse -186 -205 9.93088 0.165
sll1854 Reverse -63 -82 13.7658 0.0934
sll0309 Forward -64 -45 14.8474 0.0917
sll0478 Forward -188 -169 24.6805 0.00772
sll0677 Reverse -140 -159 8.65258 0.173
sll0899 Reverse -10 -29 15.5357 0.0775
ssr1562 Forward -233 -214 15.5357 0.0775
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.222  0.000  0.778  
0.222 0.000 0.556 0.222
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.333 0.111 0.556 0.000
0.111 0.444 0.000 0.444
0.000 0.000 0.000 1.000
0.333 0.111 0.556 0.000
0.444 0.000 0.556 0.000
0.000 0.000 0.000 1.000
0.111 0.556 0.111 0.222
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.111 0.222 0.444 0.222
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 0.444 0.222 0.333
0.889 0.000 0.111 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000