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Details for NP_439905.1_2

Name NP_439905.1_2
Length 15
Regular expression GC[CT][GCT][TG][AC][GCT][CG]CCT[GC]GCC
Central Yes

Motif logo

Genes containing this motif

245 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0611 Forward -208 -194 16.7159 0.188
slr1317 Forward -342 -328 14.9459 0.188
slr1319 Forward -335 -321 13.8643 0.188
slr1492 Forward -362 -348 10.226 0.219
slr1494 Forward -82 -68 10.0294 0.227
sll1395 Forward -346 -332 7.86607 0.289
sll1049 Reverse -318 -332 10.9143 0.208
slr1127 Reverse -318 -332 8.84938 0.241
sll0716 Forward -122 -108 7.9644 0.289
slr0721 Reverse -81 -95 7.9644 0.289
slr0741 Forward -392 -378 10.7177 0.208
slr0743 Reverse -30 -44 10.4227 0.214
slr0743a Forward -267 -253 11.0127 0.208
slr0241 Reverse -175 -189 16.3225 0.188
slr0241 Reverse -319 -333 13.9626 0.188
sll0225 Reverse -382 -396 10.816 0.208
sll0217 Reverse -305 -319 8.94771 0.237
slr0257 Forward -76 -62 8.94771 0.237
sll1327 Reverse -92 -106 11.406 0.208
sll1325 Reverse -79 -93 10.816 0.208
sll1321 Reverse -153 -167 9.14437 0.234
slr1413 Forward -46 -32 9.14437 0.234
slr1414 Reverse -175 -189 9.2427 0.233
slr1093 Reverse -287 -301 8.84938 0.241
sll1031 Reverse -198 -212 10.816 0.208
sll1659 Forward -16 -2 8.84938 0.241
sll1655 Reverse -374 -388 9.04604 0.235
sll1655 Forward -52 -38 8.35772 0.265
sll1654 Forward -176 -162 11.701 0.208
ssr2142 Forward -107 -93 9.34103 0.233
sll1185 Forward -284 -270 16.2242 0.188
sll0936 Forward -301 -287 14.9459 0.188
sll0931 Reverse -262 -276 12.8809 0.208
slr1610 Reverse -161 -175 7.86607 0.289
slr1073 Reverse -156 -170 9.43936 0.233
slr1085 Reverse -377 -391 9.83269 0.228
sll0649 Reverse -303 -317 7.86607 0.289
slr0692 Reverse -307 -321 9.43936 0.233
sll1514 Reverse -367 -381 17.6008 0.188
sll1513 Reverse -287 -301 19.5675 0.159
sll1513 Forward -81 -67 8.06273 0.285
slr1042 Reverse -188 -202 9.34103 0.233
ssr2962 Reverse -227 -241 10.3243 0.214
slr1846 Forward -210 -196 11.406 0.208
slr1846 Reverse -185 -199 9.63603 0.23
sll1749 Reverse -113 -127 7.66941 0.296
sll1946 Reverse -227 -241 9.73436 0.23
slr2034 Reverse -53 -67 10.226 0.219
slr1913 Forward -176 -162 12.3893 0.208
slr1031 Forward -211 -197 13.8643 0.188
slr1383 Reverse -117 -131 9.34103 0.233
sll1289 Reverse -185 -199 18.3875 0.159
sll1289 Reverse -135 -149 14.9459 0.188
sll1573 Reverse -371 -385 11.111 0.208
sll1573 Reverse -93 -107 10.816 0.208
slr1705 Forward -263 -249 10.816 0.208
sll1927 Forward -224 -210 14.8476 0.188
sll1927 Forward -230 -216 9.14437 0.234
slr2005 Reverse -383 -397 14.8476 0.188
slr2005 Reverse -377 -391 9.14437 0.234
sll1913 Reverse -122 -136 10.6193 0.213
ssl3615 Forward -310 -296 11.0127 0.208
slr2030 Reverse -207 -221 9.04604 0.235
slr2030 Forward -24 -10 8.75105 0.247
sll1820 Reverse -241 -255 10.1277 0.226
ssl3441 Reverse -283 -297 12.7826 0.208
sll1814 Forward -36 -22 8.16106 0.278
ssl3437 Forward -303 -289 9.83269 0.228
ssl3436 Forward -74 -60 9.83269 0.228
sll1804 Forward -65 -51 9.63603 0.23
ssr2009 Forward -357 -343 8.45605 0.262
sll1968 Forward -368 -354 11.8976 0.208
slr2073 Reverse -334 -348 9.04604 0.235
sll1730 Forward -208 -194 11.996 0.208
slr1834 Reverse -208 -222 11.996 0.208
slr1841 Forward -294 -280 11.6026 0.208
sll1712 Forward -227 -213 9.5377 0.233
slr1222 Forward -247 -233 8.16106 0.278
ssr2062 Forward -299 -285 7.76774 0.291
slr1434 Reverse -103 -117 9.34103 0.233
slr1443 Reverse -202 -216 8.06273 0.285
sll0876 Reverse -283 -297 10.7177 0.208
ssl1633 Forward -150 -136 7.76774 0.291
sll0871 Reverse -134 -148 17.1092 0.188
slr0884 Forward -182 -168 17.1092 0.188
sll0867 Reverse -184 -198 13.8643 0.188
sll0862 Reverse -61 -75 9.34103 0.233
sll0861 Reverse -227 -241 7.76774 0.291
slr1859 Forward -148 -134 8.45605 0.262
sll1765 Reverse -195 -209 8.55439 0.258
sll1762 Forward -93 -79 7.86607 0.289
sll1758 Reverse -222 -236 16.4209 0.188
sll1758 Forward -215 -201 9.63603 0.23
slr1881 Forward -280 -266 16.4209 0.188
slr1881 Reverse -287 -301 9.63603 0.23
slr2136 Reverse -260 -274 11.996 0.208
sll2002 Reverse -367 -381 8.25939 0.27
slr1808 Reverse -315 -329 9.34103 0.233
slr1737 Forward -110 -96 10.226 0.219
slr1742 Reverse -150 -164 8.35772 0.265
sll0858 Forward -264 -250 17.4042 0.188
sll0856 Reverse -332 -346 14.4542 0.188
sll0856 Reverse -236 -250 8.35772 0.265
slr0861 Forward -44 -30 8.65272 0.253
sll0839 Forward -395 -381 8.06273 0.285
slr0869 Reverse -334 -348 8.75105 0.247
sll1151 Reverse -203 -217 8.25939 0.27
sll1961 Reverse -106 -120 11.0127 0.208
sll0241 Forward -377 -363 10.7177 0.208
ssr3532 Forward -222 -208 9.2427 0.233
slr2098 Reverse -301 -315 13.7659 0.188
slr2099 Forward -140 -126 9.04604 0.235
slr1507 Reverse -77 -91 7.76774 0.291
ssr2551 Forward -142 -128 12.4876 0.208
slr2121 Forward -30 -16 10.9143 0.208
sll1995 Reverse -22 -36 8.35772 0.265
sll1221 Forward -169 -155 8.94771 0.237
slr0806 Forward -257 -243 8.65272 0.253
sll0818 Reverse -211 -225 9.43936 0.233
sll0810 Reverse -207 -221 8.35772 0.265
slr1959 Reverse -264 -278 13.8643 0.188
sll1886 Reverse -281 -295 11.5043 0.208
sll1880 Forward -211 -197 9.93102 0.228
sll1879 Reverse -83 -97 11.701 0.208
sll1386 Forward -15 -1 9.5377 0.233
slr1467 Reverse -75 -89 9.5377 0.233
sll1381 Forward -205 -191 9.2427 0.233
sll1377 Reverse -310 -324 10.0294 0.227
slr1280 Forward -201 -187 8.25939 0.27
sll1167 Forward -338 -324 8.45605 0.262
slr1287 Reverse -225 -239 8.45605 0.262
slr1159 Reverse -173 -187 11.8976 0.208
slr1171 Forward -358 -344 9.14437 0.234
sll1089 Reverse -65 -79 18.8791 0.159
sll1564 Forward -26 -12 9.2427 0.233
ssr2802 Reverse -334 -348 9.2427 0.233
sll1559 Reverse -297 -311 9.14437 0.234
sll1553 Reverse -80 -94 10.521 0.214
slr1697 Forward -204 -190 10.521 0.214
slr0945 Forward -394 -380 7.86607 0.289
slr0959 Forward -248 -234 12.8809 0.208
slr1629 Forward -43 -29 9.93102 0.228
sll1535 Reverse -367 -381 8.94771 0.237
slr1643 Reverse -77 -91 10.6193 0.213
slr1647 Reverse -103 -117 12.3893 0.208
sll1522 Reverse -212 -226 11.7993 0.208
slr0446 Reverse -105 -119 9.43936 0.233
sll0261 Reverse -186 -200 11.0127 0.208
slr0284 Forward -113 -99 11.0127 0.208
slr0400 Reverse -284 -298 11.7993 0.208
ssr0657 Reverse -100 -114 8.45605 0.262
sll1854 Reverse -268 -282 7.66941 0.296
sll1852 Forward -355 -341 10.521 0.214
slr1938 Reverse -161 -175 11.6026 0.208
slr1942 Reverse -161 -175 11.2093 0.208
slr0328 Forward -139 -125 11.0127 0.208
slr0168 Forward -106 -92 9.63603 0.23
slr0171 Reverse -292 -306 12.3893 0.208
sll0174 Reverse -263 -277 10.0294 0.227
sll0154 Forward -301 -287 11.3077 0.208
sll0350 Forward -260 -246 12.3893 0.208
sml0001 Reverse -329 -343 8.65272 0.253
slr0363 Reverse -201 -215 12.3893 0.208
slr0773 Forward -386 -372 8.16106 0.278
slr0775 Forward -216 -202 10.7177 0.208
sll0764 Forward -91 -77 8.55439 0.258
sll0753 Reverse -132 -146 11.111 0.208
sll0319 Reverse -160 -174 11.996 0.208
slr0348 Forward -117 -103 11.996 0.208
slr0021 Reverse -207 -221 10.4227 0.214
sll0408 Forward -151 -137 9.73436 0.23
slr0436 Reverse -356 -370 11.2093 0.208
sll0401 Forward -390 -376 14.3559 0.188
slr0440 Reverse -361 -375 14.3559 0.188
slr0069 Reverse -322 -336 11.6026 0.208
slr0479 Forward -29 -15 11.0127 0.208
sll0617 Reverse -316 -330 12.291 0.208
slr0630 Forward -233 -219 12.291 0.208
sll0613 Forward -333 -319 10.7177 0.208
sll0613 Forward -341 -327 9.93102 0.228
slr0638 Forward -159 -145 13.8643 0.188
slr0639 Reverse -129 -143 7.86607 0.289
sll0606 Reverse -173 -187 9.73436 0.23
slr0416 Forward -66 -52 15.2409 0.188
slr0417 Forward -113 -99 18.3875 0.159
ssl0750 Reverse -200 -214 8.35772 0.265
sll0189 Forward -378 -364 10.7177 0.208
slr0207 Reverse -186 -200 8.75105 0.247
slr0208 Reverse -39 -53 14.4542 0.188
sll0556 Forward -61 -47 8.45605 0.262
sll0541 Forward -243 -229 10.4227 0.214
sll0827 Forward -340 -326 10.4227 0.214
slr0080 Forward -317 -303 13.5693 0.196
slr0498 Reverse -6 -20 9.34103 0.233
slr0516 Reverse -205 -219 14.7492 0.188
slr0521 Reverse -212 -226 11.0127 0.208
sll0107 Reverse -153 -167 9.83269 0.228
slr0104 Forward -315 -301 10.3243 0.214
slr0114 Forward -34 -20 9.93102 0.228
sll0282 Forward -373 -359 18.3875 0.159
slr0790 Reverse -219 -233 10.816 0.208
slr0794 Forward -26 -12 20.2558 0.159
sll0777 Reverse -187 -201 10.3243 0.214
slr0710 Reverse -208 -222 18.7808 0.159
sll0659 Forward -259 -245 16.7159 0.188
sll0657 Forward -265 -251 11.701 0.208
sll0043 Reverse -249 -263 9.04604 0.235
sll0040 Reverse -262 -276 15.0442 0.188
sll0034 Forward -238 -224 9.63603 0.23
sll0508 Forward -372 -358 7.66941 0.296
sll0506 Forward -88 -74 17.5025 0.188
sll0506 Forward -212 -198 8.25939 0.27
sll0505 Forward -246 -232 9.04604 0.235
sll0505 Forward -303 -289 8.94771 0.237
slr0929 Forward -16 -2 7.9644 0.289
sll0534 Forward -57 -43 10.9143 0.208
sll0522 Reverse -252 -266 9.83269 0.228
slr1420 Forward -87 -73 8.94771 0.237
sll1341 Forward -214 -200 11.111 0.208
slr1426 Reverse -341 -355 11.111 0.208
sll1338 Reverse -151 -165 11.6026 0.208
slr1452 Reverse -247 -261 9.14437 0.234
slr1461 Reverse -245 -259 7.86607 0.289
slr1577 Reverse -170 -184 12.586 0.208
slr1577 Reverse -260 -274 11.996 0.208
slr1579 Reverse -48 -62 10.0294 0.227
sll1476 Forward -45 -31 7.9644 0.289
slr1583 Reverse -137 -151 7.9644 0.289
slr0755 Forward -266 -252 9.63603 0.23
slr1183 Forward -305 -291 7.9644 0.289
slr1186 Forward -175 -161 9.73436 0.23
slr0590 Reverse -248 -262 9.43936 0.233
slr0597 Reverse -336 -350 7.76774 0.291
sll0564 Forward -340 -326 9.83269 0.228
sll0564 Forward -249 -235 8.55439 0.258
slr0599 Reverse -47 -61 9.83269 0.228
slr0599 Reverse -138 -152 8.55439 0.258
slr0601 Forward -218 -204 11.2093 0.208
slr0601 Forward -115 -101 10.3243 0.214
slr0601 Forward -233 -219 8.84938 0.241
slr5037 Forward -160 -146 8.84938 0.241
sll5046 Forward -356 -342 22.6157 0.0346
sll5046 Forward -362 -348 7.86607 0.289
ssl5068 Forward -56 -42 10.816 0.208
sll7009 Forward -186 -172 8.35772 0.265
ssr7018 Forward -64 -50 13.0776 0.208
slr7025 Reverse -351 -365 10.3243 0.214
sll7030 Reverse -243 -257 13.7659 0.188
sll7033 Reverse -127 -141 10.521 0.214
slr7054 Reverse -57 -71 19.9608 0.159
sll7062 Forward -126 -112 7.76774 0.291
ssr7072 Reverse -192 -206 9.2427 0.233
sll8001 Forward -292 -278 10.0294 0.227
sll8002 Reverse -109 -123 10.4227 0.214
sll8012 Reverse -209 -223 9.63603 0.23
slr8014 Forward -118 -104 9.63603 0.23
sll8020 Reverse -360 -374 13.7659 0.188
sll8020 Reverse -294 -308 11.2093 0.208
ssl6023 Forward -117 -103 9.2427 0.233
ssr6024 Reverse -36 -50 9.2427 0.233
slr6040 Reverse -1 -15 9.34103 0.233
ssl6082 Forward -117 -103 9.2427 0.233
ssr6083 Reverse -36 -50 9.2427 0.233
sll6093 Reverse -334 -348 7.66941 0.296
slr6095 Forward -242 -228 7.66941 0.296
6803t06 Reverse -308 -322 9.2427 0.233
6803t27 Reverse -347 -361 11.406 0.208
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.889  0.111  
0.000 1.000 0.000 0.000
0.111 0.556 0.000 0.333
0.111 0.222 0.444 0.222
0.000 0.111 0.333 0.556
0.556 0.444 0.000 0.000
0.111 0.222 0.444 0.222
0.000 0.778 0.222 0.000
0.000 1.000 0.000 0.000
0.000 0.889 0.111 0.000
0.000 0.000 0.000 1.000
0.111 0.222 0.556 0.111
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000