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Details for NP_439903.1_1

Name NP_439903.1_1
Length 20
Regular expression AA[CT]GG[TCG]CAGAAATGG[CT]T[GC]G[GA]
Central No

Motif logo

Genes containing this motif

48 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1127 Reverse -288 -307 3.93269 0.214
slr0241 Reverse -120 -139 -0.000545616 0.236
sll1325 Forward -238 -219 10.2259 0.214
sll1039 Forward -167 -148 -0.39387 0.236
slr1095 Reverse -15 -34 -0.39387 0.236
slr1604 Reverse -40 -59 -3.83545 0.296
slr1608 Forward -203 -184 -2.26216 0.274
slr1043 Reverse -86 -105 4.32602 0.214
ssr2962 Forward -254 -235 3.73603 0.214
sll0992 Forward -206 -187 -1.96717 0.264
sll1920 Forward -383 -364 0.982764 0.236
sll1805 Forward -285 -266 -2.65548 0.274
sll1805 Forward -342 -323 -3.93378 0.299
sll1745 Reverse -214 -233 4.71934 0.214
sll0871 Forward -200 -181 -1.57384 0.258
slr0884 Reverse -116 -135 -1.57384 0.258
slr1887 Forward -373 -354 0.392778 0.236
sll0848 Reverse -49 -68 0.392778 0.236
sll0848 Forward -380 -361 -2.65548 0.274
slr0861 Reverse -297 -316 -2.65548 0.274
slr1729 Reverse -99 -118 2.3594 0.216
ssr2549 Forward -361 -342 3.04771 0.214
slr2125 Forward -140 -121 -3.04881 0.284
slr1340 Forward -157 -138 0.392778 0.236
sll1382 Reverse -292 -311 7.17762 0.214
slr1474 Forward -139 -120 7.17762 0.214
slr1288 Reverse -375 -394 -2.55715 0.274
sll0273 Forward -77 -58 30.9737 0.00024
sll0264 Reverse -246 -265 0.0977854 0.236
sll1860 Forward -345 -326 0.0977854 0.236
slr1933 Reverse -80 -99 0.0977854 0.236
sll0163 Reverse -297 -316 2.75272 0.214
slr0007 Forward -133 -114 5.70265 0.214
sll0005 Reverse -362 -381 3.53937 0.214
sll0402 Reverse -25 -44 1.47442 0.236
sll0066 Forward -175 -156 3.04771 0.214
sll0394 Reverse -275 -294 -1.08219 0.253
sll0180 Forward -157 -138 -3.63879 0.288
slr0204 Reverse -100 -119 -3.63879 0.288
sll0553 Reverse -257 -276 -0.197208 0.236
slr0565 Forward -133 -114 -0.197208 0.236
ssl1552 Reverse -366 -385 1.96607 0.231
sll0823 Reverse -16 -35 2.3594 0.216
slr0795 Forward -149 -130 2.85105 0.214
sll0739 Reverse -331 -350 -1.96717 0.264
slr0667 Reverse -179 -198 -3.54046 0.288
sll1108 Reverse -145 -164 2.94938 0.214
slr1181 Forward -312 -293 2.94938 0.214
sll5109 Forward -132 -113 -0.295539 0.236
ssl7039 Reverse -349 -368 3.04771 0.214
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.000 0.750 0.000 0.250
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.125 0.250 0.250 0.375
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.125 0.000 0.875 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.875 0.000 0.125 0.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.750 0.000 0.250
0.000 0.000 0.000 1.000
0.125 0.375 0.500 0.000
0.000 0.000 1.000 0.000
0.250 0.000 0.750 0.000