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Details for NP_001035870.1_3

Name NP_001035870.1_3
Length 20
Regular expression CAACT[CG]AG[TC][TC]T[AG]GC[CG]AT[CT]GG
Central Yes

Motif logo

Genes containing this motif

140 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -288 -269 -1.67217 0.246
slr1124 Reverse -343 -362 -4.91709 0.278
slr0725 Reverse -128 -147 -5.80207 0.29
sll0225 Reverse -370 -389 -3.44213 0.277
sll1321 Forward -184 -165 -2.95047 0.26
slr1413 Reverse -15 -34 -2.95047 0.26
sll1318 Reverse -223 -242 1.47442 0.163
sll1036 Forward -192 -173 -1.37718 0.23
sll1028 Forward -126 -107 1.67108 0.163
ssr2972 Reverse -42 -61 -4.91709 0.278
slr1773 Reverse -237 -256 -4.91709 0.278
sll1664 Reverse -112 -131 -4.13045 0.278
sll1198 Reverse -299 -318 -0.590531 0.2
ssl2384 Reverse -115 -134 -0.590531 0.2
sll1196 Reverse -245 -264 2.45773 0.163
slr1299 Forward -49 -30 1.96607 0.163
slr1301 Forward -269 -250 -5.31042 0.279
slr1306 Forward -155 -136 0.687771 0.173
sll1186 Reverse -218 -237 -2.85214 0.26
slr0978 Reverse -81 -100 -2.75381 0.26
sll1020 Forward -356 -337 3.04771 0.163
slr0679 Reverse -74 -93 -2.36049 0.259
slr0679 Reverse -351 -370 -5.21209 0.278
sll1516 Reverse -49 -68 0.392778 0.176
slr1596 Forward -340 -321 0.392778 0.176
slr1763 Reverse -351 -370 0.294447 0.176
slr1909 Reverse -26 -45 -4.52377 0.278
slr1023 Reverse -27 -46 -3.83545 0.278
slr1024 Reverse -348 -367 -3.83545 0.278
sll0984 Forward -371 -352 -5.21209 0.278
sll1300 Reverse -178 -197 -6.09707 0.297
sll1293 Reverse -63 -82 -5.21209 0.278
sll1573 Reverse -222 -241 -1.86883 0.25
slr1705 Forward -134 -115 -1.86883 0.25
slr1134 Reverse -17 -36 8.35759 0.163
sll1080 Forward -363 -344 -1.37718 0.23
sll1077 Forward -269 -250 -2.75381 0.26
slr1142 Reverse -168 -187 -2.75381 0.26
sll1813 Reverse -360 -379 -5.99873 0.297
sll1968 Forward -350 -331 -5.01543 0.278
slr1841 Reverse -345 -364 2.94938 0.163
sll1457 Reverse -219 -238 -4.52377 0.278
slr1751 Forward -297 -278 4.52268 0.163
sll1143 Reverse -29 -48 -1.18052 0.224
sll0875 Reverse -276 -295 -5.21209 0.278
sll0873 Forward -370 -351 -4.13045 0.278
slr0881 Reverse -71 -90 -4.13045 0.278
slr1410 Reverse -378 -397 -4.13045 0.278
slr1860 Forward -98 -79 -0.197208 0.187
slr1742 Forward -263 -244 -3.93378 0.278
slr1747 Reverse -118 -137 -3.73712 0.278
slr0867 Reverse -159 -178 4.42435 0.163
slr1999 Reverse -195 -214 4.32602 0.163
slr1719 Forward -391 -372 3.34271 0.163
sll1987 Reverse -276 -295 -5.01543 0.278
ssl3769 Reverse -43 -62 7.57094 0.163
slr2103 Forward -109 -90 -4.03212 0.278
sll1423 Forward -294 -275 -5.40875 0.28
slr1506 Reverse -141 -160 -5.40875 0.28
slr0815 Forward -234 -215 -5.11376 0.278
sll1244 Forward -204 -185 -3.3438 0.275
slr1958 Reverse -328 -347 -4.03212 0.278
sll1880 Forward -182 -163 -5.60541 0.283
sll1879 Forward -375 -356 4.42435 0.163
slr1468 Forward -202 -183 0.982764 0.163
slr1278 Forward -84 -65 -5.50708 0.28
sll1085 Reverse -126 -145 -5.80207 0.29
sll1555 Forward -144 -125 22.1239 0.0103
slr1692 Forward -86 -67 0.982764 0.163
slr0938 Forward -174 -155 0.196116 0.177
slr0947 Reverse -129 -148 7.17762 0.163
sll1525 Forward -305 -286 -4.42544 0.278
slr1643 Reverse -218 -237 -4.42544 0.278
sll0272 Forward -219 -200 -5.11376 0.278
slr0143 Reverse -362 -381 0.392778 0.176
ssr3300 Forward -253 -234 -3.73712 0.278
slr0337 Reverse -54 -73 -2.65548 0.26
slr0172 Forward -272 -253 -1.96717 0.251
sll0771 Forward -314 -295 -5.60541 0.283
slr0775 Forward -216 -197 -5.11376 0.278
smr0001 Forward -303 -284 -4.13045 0.278
sll0756 Forward -172 -153 2.3594 0.163
sll0749 Reverse -19 -38 1.47442 0.163
sll0749 Reverse -79 -98 -4.6221 0.278
slr0783 Forward -170 -151 1.47442 0.163
slr0783 Forward -110 -91 -4.6221 0.278
sll0314 Reverse -239 -258 -3.63879 0.278
slr0357 Reverse -260 -279 5.11266 0.163
sll0207 Forward -251 -232 -4.72043 0.278
slr0440 Reverse -174 -193 -4.81876 0.278
slr0049 Forward -366 -347 1.37609 0.163
sll0055 Forward -115 -96 1.47442 0.163
slr0067 Reverse -106 -125 1.47442 0.163
sll0462 Reverse -257 -276 -3.04881 0.263
slr0646 Reverse -279 -298 -2.55715 0.26
sll0371 Reverse -183 -202 4.71934 0.163
slr0191 Forward -392 -373 -2.36049 0.259
ssr0330 Forward -386 -367 -5.50708 0.28
ssr1528 Forward -241 -222 -5.21209 0.278
slr0904 Reverse -351 -370 -3.54046 0.278
slr0575 Reverse -82 -101 -5.50708 0.28
slr0582 Reverse -24 -43 -5.31042 0.279
slr0835 Reverse -254 -273 -2.85214 0.26
slr0076 Reverse -65 -84 7.07928 0.163
slr0090 Forward -232 -213 -2.36049 0.259
slr0506 Reverse -98 -117 -0.885524 0.211
sll0479 Reverse -117 -136 -4.32711 0.278
slr0522 Forward -256 -237 4.81767 0.163
sll0100 Forward -272 -253 1.37609 0.163
sll0096 Reverse -65 -84 2.65439 0.163
sll0737 Forward -301 -282 -0.197208 0.187
slr0039 Reverse -303 -322 -4.13045 0.278
slr0040 Reverse -373 -392 5.60432 0.163
sll0513 Forward -304 -285 5.211 0.163
sll0502 Reverse -199 -218 -4.52377 0.278
slr0542 Reverse -149 -168 -5.21209 0.278
slr0927 Forward -345 -326 0.982764 0.163
slr1457 Reverse -98 -117 -6.09707 0.297
slr1562 Reverse -81 -100 2.3594 0.163
slr1562 Reverse -180 -199 0.687771 0.173
slr1588 Reverse -273 -292 2.16274 0.163
sll0720 Reverse -263 -282 -5.31042 0.279
slr1659 Reverse -144 -163 -5.50708 0.28
sll0436 Reverse -256 -275 -5.99873 0.297
slr0457 Reverse -47 -66 -2.95047 0.26
sll0576 Forward -376 -357 -5.80207 0.29
slr0597 Reverse -362 -381 -5.50708 0.28
ssl5045 Reverse -306 -325 -6.09707 0.297
slr5051 Forward -336 -317 -4.22878 0.278
sll5052 Forward -244 -225 1.0811 0.163
slr5055 Forward -303 -284 2.45773 0.163
ssl5091 Forward -53 -34 -5.01543 0.278
ssr5092 Reverse -319 -338 -5.01543 0.278
ssl5114 Reverse -277 -296 0.982764 0.163
ssr7018 Forward -387 -368 1.0811 0.163
ssr7018 Forward -314 -295 1.0811 0.163
ssr7018 Forward -242 -223 1.0811 0.163
ssr7018 Forward -170 -151 1.0811 0.163
ssr7018 Forward -98 -79 1.0811 0.163
ssr7018 Forward -29 -10 1.0811 0.163
ssl7019 Reverse -331 -350 1.0811 0.163
ssl7019 Reverse -257 -276 1.0811 0.163
ssl7019 Reverse -179 -198 1.0811 0.163
ssl7019 Reverse -105 -124 1.0811 0.163
ssl7019 Reverse -31 -50 1.0811 0.163
ssl7020 Reverse -332 -351 1.0811 0.163
ssl7020 Reverse -258 -277 1.0811 0.163
ssl7020 Reverse -185 -204 1.0811 0.163
ssl7020 Reverse -115 -134 1.0811 0.163
ssl7020 Reverse -42 -61 1.0811 0.163
ssl7021 Reverse -94 -113 1.0811 0.163
ssl7021 Reverse -26 -45 1.0811 0.163
slr7023 Forward -393 -374 1.0811 0.163
slr8022 Forward -131 -112 -4.6221 0.278
ssr6002 Forward -53 -34 -5.01543 0.278
ssl6061 Reverse -263 -282 -5.01543 0.278
ssr6062 Forward -53 -34 -5.01543 0.278
6803t22 Reverse -98 -117 0.294447 0.176
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.929 0.000 0.071 0.000
0.000 0.929 0.000 0.071
0.000 0.000 0.000 1.000
0.071 0.643 0.214 0.071
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.429 0.000 0.571
0.000 0.429 0.000 0.571
0.000 0.000 0.000 1.000
0.429 0.143 0.357 0.071
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 0.643 0.286 0.071
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.500 0.000 0.500
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000